Human Intermediate Filament Database

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Human Intermediate Filament Database - K31 (Ha1)

Intermediate Filament Details

Protein Name	keratin 31, K31
Former Protein Name	Ha1
Gene Symbol	KRT31
Former Gene Symbol	KRTHA1
Intermediate Filament Type	I
HGNC ID	6448
OMIM ID	*601077
NCBI Gene ID	3881

INTEGRATED SEQUENCE VIEW
Information last updated on 2009-07-21 17:05:39
* variant associated with disease as a risk factor rather than a causal factor.
Note: Sequences are numbered according to latest reference sequence information. Discrepancies may exist with some publications.
Chromosome 17q12-q21
Chromosome Strand -
Chromosome GI 51511734
Chromosome RefSeq ID NC_000017.9
36807370 : GAGAATTTAG ACTCTGTCTT CAGCCAGGCA CTCCCTCCCT CCCTCCCAGC : 36807321 -53 : GAGAATTTAG ACTCTGTCTT CAGCCAGGCA CTCCCTCCCT CCCTCCCAGC : -4 36807320 : ACTATGCCCT ACAACTTCTG CCTGCCCAGC CTGAGCTGCC GCACCAGCTG : 36807271 -3 : ACTATGCCCT ACAACTTCTG CCTGCCCAGC CTGAGCTGCC GCACCAGCTG : 47 1 : M P Y N F C L P S L S C R T S C : 16 36807270 : CTCCTCCCGG CCCTGCGTGC CCCCCAGCTG CCACAGCTGC ACCCTGCCCG : 36807221 48 : CTCCTCCCGG CCCTGCGTGC CCCCCAGCTG CCACAGCTGC ACCCTGCCCG : 97 17 : S S R P C V P P S C H S C T L P : 32 36807220 : GGGCCTGCAA CATCCCCGCC AATGTGAGCA ACTGCAACTG GTTCTGCGAG : 36807171 98 : GGGCCTGCAA CATCCCCGCC AATGTGAGCA ACTGCAACTG GTTCTGCGAG : 147 33 : G A C N I P A N V S N C N W F C E : 49 36807170 : GGCTCCTTCA ATGGTAGCGA GAAGGAGACT ATGCAGTTCC TGAACGACCG : 36807121 148 : GGCTCCTTCA ATGGTAGCGA GAAGGAGACT ATGCAGTTCC TGAACGACCG : 197 50 : G S F N G S E K E T M Q F L N D R : 66 36807120 : CCTGGCCAGC TACCTGGAGA AAGTGCGTCA GCTGGAGCGG GACAACGCGG : 36807071 198 : CCTGGCCAGC TACCTGGAGA AAGTGCGTCA GCTGGAGCGG GACAACGCGG : 247 67 : L A S Y L E K V R Q L E R D N A : 82 36807070 : AGCTGGAGAA CCTCATCCGG GAGCGGTCTC AGCAGCAGGA GCCCTTGCTG : 36807021 248 : AGCTGGAGAA CCTCATCCGG GAGCGGTCTC AGCAGCAGGA GCCCTTGCTG : 297 83 : E L E N L I R E R S Q Q Q E P L L : 99 36807020 : TGCCCCAGTT ACCAGTCCTA TTTTAAGACC ATTGAGGAGC TCCAGCAGAA : 36806971 298 : TGCCCCAGTT ACCAGTCCTA TTTTAAGACC ATTGAGGAGC TCCAGCAGAA : 347 100 : C P S Y Q S Y F K T I E E L Q Q K : 116 36806970 : GGTGAGCGGC ATTGCTGTCA TCTCCAAGCA AGAGAGTTTG CTGTGATTCT : 36806921 348 : G : 348 36806920 : GTCTGTGATA GAGAAGTGTG TTTCTTGCTT CTGTGCTGTC ATAATTCTTG : 36806871 36806870 : CTTCCTCTTT TATTTCAAAA TGGCTTAAGT CATTTTTAAA AAGTTGATGA : 36806821 36806820 : TTTCATATTT ATTTTCAGTC CTCACTAAGC CACCTCTCAC TCCCCAGATC : 36806771 349 : ATC : 351 117 : I : 117 36806770 : CTGTGTACCA AGTCTGAGAA TGCCAGGCTT GTGGTGCAGA TCGACAACGC : 36806721 352 : CTGTGTACCA AGTCTGAGAA TGCCAGGCTT GTGGTGCAGA TCGACAACGC : 401 118 : L C T K S E N A R L V V Q I D N A : 134 36806720 : CAAGCTGGCT GCGGATGATT TCAGAACCAA GTGAGTTGTT CGGAATTTGC : 36806671 402 : CAAGCTGGCT GCGGATGATT TCAGAACCAA : 431 135 : K L A A D D F R T K : 144 36806670 : ACTAGTGTCA ATTGCTTCTG TTTAATCTTT AAAGAAAAGG GATTTCCATC : 36806621 36806620 : TGAAAACAGA TCTACCCACT TGTTGTGAAG GATTCTGCAG AGGACTGGGG : 36806571 36806570 : AGAACCAAGC AAAGAAATGC AAAAATGGAT GAGGACTCAC ATCAATCTGT : 36806521 36806520 : TTGTTTTGGG ATGAATATTG GGTATTGATG GAGCCTCCAG AAACCTCTGT : 36806471 36806470 : CTCCTGGGCC TATTCATTAC AGAAAGTGGA AAGATAAGGC ACATGAGGTT : 36806421 36806420 : ATCAAAAATC ATTCCTGTGA GTCTTGAAGA TCTACCAGGT AGTACTCTGA : 36806371 36806370 : CCCTGTCCTT GCGCAGGTAC CAGACCGAGC TGTCCCTGCG GCAGCTGGTG : 36806321 432 : GTAC CAGACCGAGC TGTCCCTGCG GCAGCTGGTG : 465 145 : Y Q T E L S L R Q L V : 155 36806320 : GAGTCGGACA TCAACGGTCT GCGCAGGATC CTGGATGAGC TGACCCTGTG : 36806271 466 : GAGTCGGACA TCAACGGTCT GCGCAGGATC CTGGATGAGC TGACCCTGTG : 515 156 : E S D I N G L R R I L D E L T L C : 172 36806270 : CAAGTCCGAC CTGGAGGCCC AGGTGGAGTC CCTGAAGGAG GAGCTGCTCT : 36806221 516 : CAAGTCCGAC CTGGAGGCCC AGGTGGAGTC CCTGAAGGAG GAGCTGCTCT : 565 173 : K S D L E A Q V E S L K E E L L : 188 36806220 : GCCTCAAGAG CAACCATGAG CAGGTGAGAC TAGAAATGAG AAATGCACAA : 36806171 566 : GCCTCAAGAG CAACCATGAG CAG : 588 189 : C L K S N H E Q : 196 36806170 : ACCTGTCTCA GCCTCTGGCT CAGGGTTGCT TTAGTGATTT GGGGCAGCAG : 36806121 36806120 : AATGCAGAGT ATGAGTACAA GACTGAGGGT TTCCTTTGAA AACATCACGG : 36806071 36806070 : TAAGAGAAAA ATTGGAGAGA GATAAGACCT GTTCATGTTC CCAGACAGGA : 36806021 36806020 : AACATCTTTC ACTTTAAACT AGCACATTAT TTGAGTTGCC CGGAGCAGCT : 36805971 36805970 : CCATGTGCTT GCAGTTGATC AATAGTTGTA GAATGAGTCC TAGCATTGCA : 36805921 36805920 : GTGTTATTGC TTTGTAAAGT CTTTTTTTTT TTTTTTTGGC AAAGGCCAAG : 36805871 36805870 : AAAAAAAATA TCAAACCTTA TAAATGTGAG TCTCTACTCT TTCAAAGTAT : 36805821 36805820 : TGGTGAAGAG TGTTTGTGAG ATTCTTCCTC TCTCTTGGGA GGGGCCATGA : 36805771 36805770 : CATGCTCTTA CCTCTTACTT GACAGCAAGA GTTTTTTGAT ATATGGTCTG : 36805721 36805720 : AAATTGCACA GCCTATTTTT TTTGGCATTC TGAGGTCCTC ACAGCCAATT : 36805671 36805670 : GTAAACTGGG AAAGTTGAAT ATCAATTAGT TCATCCTTCA GTGGCATCCA : 36805621 36805620 : AGCAAACTTT TGGGATTTTT TTCTGAAGCC AAGTGCCATG GCACAGCAGA : 36805571 36805570 : TGGTGGGGAG GGGGCTATGC CACATGGAGT GCCTTGAGCT GTCACAAACT : 36805521 36805520 : GCTCCACTCA AAGTTTCTTT TCCGAGAAAA TAGACTAACA GGGTTTCAAC : 36805471 36805470 : AAGCAATGCC ATTCCTTAGA GTTCATTCTT TGCTGAGCAT AGTAACTCTT : 36805421 36805420 : GTATTTTCTG CATCCATAGG AGGTCAATAC CCTGCGCTGC CAGCTTGGAG : 36805371 589 : G AGGTCAATAC CCTGCGCTGC CAGCTTGGAG : 619 197 : E V N T L R C Q L G : 206 36805370 : ACCGCCTCAA TGTGGAGGTG GATGCTGCTC CCACTGTGGA CCTGAATCGG : 36805321 620 : ACCGCCTCAA TGTGGAGGTG GATGCTGCTC CCACTGTGGA CCTGAATCGG : 669 207 : D R L N V E V D A A P T V D L N R : 223 36805320 : GTGCTGAACG AGACCAGGAG TCAGTATGAG GCCCTGGTGG AAACCAACCG : 36805271 670 : GTGCTGAACG AGACCAGGAG TCAGTATGAG GCCCTGGTGG AAACCAACCG : 719 224 : V L N E T R S Q Y E A L V E T N R : 240 36805270 : CAGGGAAGTG GAGCAATGGT TCACCACGCA GGTGGGCATC TAAGCACGTG : 36805221 720 : CAGGGAAGTG GAGCAATGGT TCACCACGCA G : 750 241 : R E V E Q W F T T Q : 250 36805220 : GCCCCTCAGG ACCCAAGGCC CCCCAGGGCC CCGGAGGCAG GGTCTGATCC : 36805171 36805170 : TTTCTCCCCT TGGGTGTTTC AGACCGAGGA GCTGAACAAG CAGGTGGTAT : 36805121 751 : ACCGAGGA GCTGAACAAG CAGGTGGTAT : 778 251 : T E E L N K Q V V : 259 36805120 : CCAGCTCAGA GCAGCTGCAG TCCTACCAGG CGGAGATCAT CGAGCTGAGA : 36805071 779 : CCAGCTCAGA GCAGCTGCAG TCCTACCAGG CGGAGATCAT CGAGCTGAGA : 828 260 : S S S E Q L Q S Y Q A E I I E L R : 276 36805070 : CGCACAGTCA ACGCCCTGGA GATCGAGCTG CAGGCCCAGC ACAACCTGGT : 36805021 829 : CGCACAGTCA ACGCCCTGGA GATCGAGCTG CAGGCCCAGC ACAACCTG : 876 277 : R T V N A L E I E L Q A Q H N L : 292 36805020 : GTGTATTGTT CAGACCTGCT GGTGAGCGAC GGGAACTTGG GAGGCAGAGT : 36804971 36804970 : CCCGGGGATG TGCTTGGGGC CACACACTCT CCTTAGCTCT TGGAGCTTGT : 36804921 36804920 : GACTTCCTTG TAATCCTGTG AAGAAACCCT TTGAAGGAGC AGCTCTCTGA : 36804871 36804870 : CATTCCCAAT CTTCTCCACC ACAGCGAGAC TCTCTGGAAA ACACGCTGAC : 36804821 877 : CGAGAC TCTCTGGAAA ACACGCTGAC : 902 293 : R D S L E N T L T : 301 36804820 : AGAGAGTGAG GCCCGCTACA GCTCCCAGCT GTCCCAGGTG CAGAGCCTGA : 36804771 903 : AGAGAGTGAG GCCCGCTACA GCTCCCAGCT GTCCCAGGTG CAGAGCCTGA : 952 302 : E S E A R Y S S Q L S Q V Q S L : 317 36804770 : TCACCAACGT GGAGTCCCAG CTGGCGGAGA TCCGCAGTGA CCTGGAGCGG : 36804721 953 : TCACCAACGT GGAGTCCCAG CTGGCGGAGA TCCGCAGTGA CCTGGAGCGG : 1002 318 : I T N V E S Q L A E I R S D L E R : 334 36804720 : CAGAACCAGG AGTACCAGGT GCTGCTGGAT GTGCGTGCCC GGCTGGAGTG : 36804671 1003 : CAGAACCAGG AGTACCAGGT GCTGCTGGAT GTGCGTGCCC GGCTGGAGTG : 1052 335 : Q N Q E Y Q V L L D V R A R L E C : 351 VARIANTS : A : VARIANTS 36804670 : TGAGATCAAC ACATACCGGA GCCTGCTGGA GAGCGAGGAC TGCAAGTGAG : 36804621 1053 : TGAGATCAAC ACATACCGGA GCCTGCTGGA GAGCGAGGAC TGCAA : 1097 352 : E I N T Y R S L L E S E D C N : 366 VARIANTS : dddddd : VARIANTS 36804620 : TACATGGGCA GACGTGTTTG ATGAAATGAT GCACGTGTGA GTGTAACAGT : 36804571 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804570 : TAGACACCAT GCAAATATTG CATACCTTGG AAAGGAAATT ATGCCTTCAC : 36804521 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804520 : ACTAGACATG CTCAAACAGA ACTCAGACAA CATAATATGG CCATCATTTA : 36804471 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804470 : AAACATAAAT GGTTTGGTAG CAAGAGTTGT TTGATGTACA AACTGAAATT : 36804421 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804420 : GCACTGCCAA GTCTTTGCAT TCTAGTATGA TAATATGCAT GACTGCATGA : 36804371 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804370 : TATGTGATCA ATGCCTTACT TTTTACAATA CTGTATTGCC TAGTGGGTAC : 36804321 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804320 : ATTCCCATAG GCTACCTGAT TTGATCTTAT AATTACCACC AGGTGGGCTG : 36804271 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804270 : GATCAGTATT CCCTCCATTC TACAGGAAAG TAAACTGGGG CTTGGAGAAG : 36804221 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804220 : GTAAATGACT CACCCCATGT CATCAGTTTG GCATGAATGG ATTTGAGAGT : 36804171 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804170 : AGACATCAGA GTTTCAGAGT TTCTGTCTAC CTTGGTGCTC TATGGCAGGG : 36804121 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804120 : AGACCATTAA CAATTTGAGT TAGTTATCTT TGTAGCAGGG GAGTCTGTGC : 36804071 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804070 : CTTTTCTGTT CTAGGCCAGG TCAAGTCCCT TGACCCAGGC ATTCTTACCC : 36804021 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36804020 : TTGGGGATAT CTCTGGCATA TGATTTTAAA ATTGCCCTTA ACTCACTTTT : 36803971 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36803970 : CCACATCATT CTTTTGTCTC CAGTCTGCCC AGCAATCCCT GTGCCACGAC : 36803921 1098 : TCTGCCC AGCAATCCCT GTGCCACGAC : 1124 367 : L P S N P C A T T : 375 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36803920 : CAACGCGTGC AGCAAGCCCA TCGGACCCTG TCTCTCCAAT CCCTGTACCT : 36803871 1125 : CAACGCGTGC AGCAAGCCCA TCGGACCCTG TCTCTCCAAT CCCTGTACCT : 1174 376 : N A C S K P I G P C L S N P C T : 391 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36803870 : CTTGTGTCCC TCCTGCCCCC TGCACACCCT GTGCCCCACG CCCCCGCTGT : 36803821 1175 : CTTGTGTCCC TCCTGCCCCC TGCACACCCT GTGCCCCACG CCCCCGCTGT : 1224 392 : S C V P P A P C T P C A P R P R C : 408 VARIANTS : dddddddddd dddddddddd dddddddddd dddddddddd dddddddddd : VARIANTS 36803820 : GGGCCCTGCA ATTCCTTCGT GCGCTAGAAC CTAGGGAATG CCAGAGGAGC : 36803771 1225 : GGGCCCTGCA ATTCCTTCGT GCGCTAGAAC CTAGGGAATG CCAGAGGAGC : *23 409 : G P C N S F V R : 416 VARIANTS : dddddddddd dddddddddd ddd : VARIANTS 36803770 : AAGGATGCAG GGCCCAGGAC TCCAGAGCTG TGACCTGGCT CTGGTTCAAC : 36803721 *24 : AAGGATGCAG GGCCCAGGAC TCCAGAGCTG TGACCTGGCT CTGGTTCAAC : *73 36803720 : AAAAGGGGCC TGAAAACATC ATTTGCATGG CTGGAGTTGC CCGCGTAAGG : 36803671 *74 : AAAAGGGGCC TGAAAACATC ATTTGCATGG CTGGAGTTGC CCGCGTAAGG : *123 36803670 : CAGCCAAGAA ACTCACCCAA AGCCTGTAGC CTCCCCAACT ACTCCAGACT : 36803621 *124 : CAGCCAAGAA ACTCACCCAA AGCCTGTAGC CTCCCCAACT ACTCCAGACT : *173 36803620 : GTCCTGCTCA CCCTTTCCTT CCTGGGGGTC TGTTCCTTCC TATGCTCACC : 36803571 *174 : GTCCTGCTCA CCCTTTCCTT CCTGGGGGTC TGTTCCTTCC TATGCTCACC : *223 36803570 : CAGAGAACTC TCTGATGTGC CAGTGGGCCT CCCTTTTAAC CTCCTAATAA : 36803521 *224 : CAGAGAACTC TCTGATGTGC CAGTGGGCCT CCCTTTTAAC CTCCTAATAA : *273 36803520 : ATATCATTTC CTTGGCAAA- ---------- --------- : 36803502 *274 : ATATCATTTC CTTGGCAAAA AAAAAAAAAA AAAAAAAAA : *312
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mRNA SEQUENCE
Reference sequence last updated on 2009-07-21 17:05:39
RefSeq ID NM_002277.2
GI 14917114
Length 1616 nucleotides
Download File | Text
Sequence
Legend: Blue = CDS, Red = UTR
-53 GAGAATTTAG ACTCTGTCTT CAGCCAGGCA CTCCCTCCCT CCCTCCCAGC -4 -3 ACTATGCCCT ACAACTTCTG CCTGCCCAGC CTGAGCTGCC GCACCAGCTG 47 48 CTCCTCCCGG CCCTGCGTGC CCCCCAGCTG CCACAGCTGC ACCCTGCCCG 97 98 GGGCCTGCAA CATCCCCGCC AATGTGAGCA ACTGCAACTG GTTCTGCGAG 147 148 GGCTCCTTCA ATGGTAGCGA GAAGGAGACT ATGCAGTTCC TGAACGACCG 197 198 CCTGGCCAGC TACCTGGAGA AAGTGCGTCA GCTGGAGCGG GACAACGCGG 247 248 AGCTGGAGAA CCTCATCCGG GAGCGGTCTC AGCAGCAGGA GCCCTTGCTG 297 298 TGCCCCAGTT ACCAGTCCTA TTTTAAGACC ATTGAGGAGC TCCAGCAGAA 347 348 GATCCTGTGT ACCAAGTCTG AGAATGCCAG GCTTGTGGTG CAGATCGACA 397 398 ACGCCAAGCT GGCTGCGGAT GATTTCAGAA CCAAGTACCA GACCGAGCTG 447 448 TCCCTGCGGC AGCTGGTGGA GTCGGACATC AACGGTCTGC GCAGGATCCT 497 498 GGATGAGCTG ACCCTGTGCA AGTCCGACCT GGAGGCCCAG GTGGAGTCCC 547 548 TGAAGGAGGA GCTGCTCTGC CTCAAGAGCA ACCATGAGCA GGAGGTCAAT 597 598 ACCCTGCGCT GCCAGCTTGG AGACCGCCTC AATGTGGAGG TGGATGCTGC 647 648 TCCCACTGTG GACCTGAATC GGGTGCTGAA CGAGACCAGG AGTCAGTATG 697 698 AGGCCCTGGT GGAAACCAAC CGCAGGGAAG TGGAGCAATG GTTCACCACG 747 748 CAGACCGAGG AGCTGAACAA GCAGGTGGTA TCCAGCTCAG AGCAGCTGCA 797 798 GTCCTACCAG GCGGAGATCA TCGAGCTGAG ACGCACAGTC AACGCCCTGG 847 848 AGATCGAGCT GCAGGCCCAG CACAACCTGC GAGACTCTCT GGAAAACACG 897 898 CTGACAGAGA GTGAGGCCCG CTACAGCTCC CAGCTGTCCC AGGTGCAGAG 947 948 CCTGATCACC AACGTGGAGT CCCAGCTGGC GGAGATCCGC AGTGACCTGG 997 998 AGCGGCAGAA CCAGGAGTAC CAGGTGCTGC TGGATGTGCG TGCCCGGCTG 1047 1048 GAGTGTGAGA TCAACACATA CCGGAGCCTG CTGGAGAGCG AGGACTGCAA 1097 1098 TCTGCCCAGC AATCCCTGTG CCACGACCAA CGCGTGCAGC AAGCCCATCG 1147 1148 GACCCTGTCT CTCCAATCCC TGTACCTCTT GTGTCCCTCC TGCCCCCTGC 1197 1198 ACACCCTGTG CCCCACGCCC CCGCTGTGGG CCCTGCAATT CCTTCGTGCG 1247 1248 CTAGAACCTA GGGAATGCCA GAGGAGCAAG GATGCAGGGC CCAGGACTCC *46 *47 AGAGCTGTGA CCTGGCTCTG GTTCAACAAA AGGGGCCTGA AAACATCATT *96 *97 TGCATGGCTG GAGTTGCCCG CGTAAGGCAG CCAAGAAACT CACCCAAAGC *146 *147 CTGTAGCCTC CCCAACTACT CCAGACTGTC CTGCTCACCC TTTCCTTCCT *196 *197 GGGGGTCTGT TCCTTCCTAT GCTCACCCAG AGAACTCTCT GATGTGCCAG *246 *247 TGGGCCTCCC TTTTAACCTC CTAATAAATA TCATTTCCTT GGCAAAAAAA *296 *297 AAAAAAAAAA AAAAAA
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PROTEIN SEQUENCE AND DOMAIN INFORMATION
Reference sequence last updated on 2009-07-21 17:05:39
RefSeq ID NP_002268.2
GI 14917115
Isoelectric Point 4.5342
Molecular Weight 47236.9 Daltons
Length 416 amino acids
Download File | Text
Sequence
1 MPYNFCLPSL SCRTSCSSRP CVPPSCHSCT LPGACNIPAN VSNCNWFCEG 50 51 SFNGSEKETM QFLNDRLASY LEKVRQLERD NAELENLIRE RSQQQEPLLC 100 101 PSYQSYFKTI EELQQKILCT KSENARLVVQ IDNAKLAADD FRTKYQTELS 150 151 LRQLVESDIN GLRRILDELT LCKSDLEAQV ESLKEELLCL KSNHEQEVNT 200 201 LRCQLGDRLN VEVDAAPTVD LNRVLNETRS QYEALVETNR REVEQWFTTQ 250 251 TEELNKQVVS SSEQLQSYQA EIIELRRTVN ALEIELQAQH NLRDSLENTL 300 301 TESEARYSSQ LSQVQSLITN VESQLAEIRS DLERQNQEYQ VLLDVRARLE 350 351 CEINTYRSLL ESEDCNLPSN PCATTNACSK PIGPCLSNPC TSCVPPAPCT 400 401 PCAPRPRCGP CNSFVR
Head L1 L12 L2 Tail
1A 1B 2A 2B
Domain Name Probable Starting Amino Acid Position Probable Ending Amino Acid Position
Head 1 56
1A 57 91
L1 92 102
1B 103 203
L12 204 219
2A 220 238
L2 239 246
2B 247 367
Tail 368 416
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RELATED SEQUENCES AND MULTIPLE SEQUENCE ALIGNMENT
The following table shows the orthologous sequences in other organisms as indicated by NCBI HomoloGene ID 74433.
Information last updated on 2007-08-17 12:27:01
Organism NCBI Gene ID mRNA Accession Protein Accession Taxonomy division
Rattus norvegicus 450228 NM_001008817.1 NP_001008817.1 Rodents
Mus musculus 16660 NM_010659.1 NP_034789.1 Rodents
Pan troglodytes 454661 XM_001168152.1 XP_001168152.1 Primates
Canis familiaris 490988 XM_548111.2 XP_548111.2 Mammals
Vertebrate ClustalW multiple sequence alignments
Multiple sequence alignments were created using ClustalW for vertebrate sequences and the results available for viewing, download and visualization. Please use the analysis tools to include other sequences.
Type of ClustalW alignment Download in FASTA format View file in FASTA format
Nucleotide file view
Protein file view

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ALLELIC VARIANTS

Note that a single record in the following table may represent multiple people with that particular variant who are in the same family.

Click here to download an Excel spreadsheet of this data.

Click here to open table in a new window (for ease of viewing and printing).

Information last updated on 2006-09-26 08:50:20

* variant associated with disease as a risk factor rather than a causal factor.
Note: Sequences are numbered according to latest reference sequence information. Discrepancies may exist with some publications.

ID DNA Allelic Variant DNA Allelic Variant Type Protein Allelic Variant Protein Allelic Variant Type Domain Population Studied Allele Frequency Reference
9646 c.1097+1G>A Substitution p.Asn366_Arg416delinsLysX Indel 2B, Tail - - Winter et al, 1997
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