Human Intermediate Filament Database

Intermediate Filament Details

Protein Name	keratin 38, K38
Former Protein Name	Ha8
Gene Symbol	KRT38
Former Gene Symbol	KRTHA8
Intermediate Filament Type	I
HGNC ID	6456
OMIM ID	*604542
NCBI Gene ID	8687

INTEGRATED SEQUENCE VIEW
Information last updated on 2009-07-21 16:58:40
* variant associated with disease as a risk factor rather than a causal factor.
Note: Sequences are numbered according to latest reference sequence information. Discrepancies may exist with some publications.
Chromosome 17q12-q21
Chromosome Strand -
Chromosome GI 51511734
Chromosome RefSeq ID NC_000017.9
36851122 : TAGTCCTCCT GCTACACCAC TGACCAACAG GAAAGTTTGT GTCTCCAGAG : 36851073 -423 : TAGTCCTCCT GCTACACCAC TGACCAACAG GAAAGTTTGT GTCTCCAGAG : -374 36851072 : TGGACACATC CATAAAGAGG CCAAACCCAG TCAAGGTCTA AGCATCTGAT : 36851023 -373 : TGGACACATC CATAAAGAGG CCAAACCCAG TCAAGGTCTA AGCATCTGAT : -324 36851022 : GGCTATAACT TTGCTTCTTT GAAAGATAAT AAAAAGCTTC TGACCTCCCA : 36850973 -323 : GGCTATAACT TTGCTTCTTT GAAAGATAAT AAAAAGCTTC TGACCTCCCA : -274 36850972 : TCAACAGCCA ACCTGATTTC AAAGAGCCAA GAGGCCTCAG ATTCGTCAAC : 36850923 -273 : TCAACAGCCA ACCTGATTTC AAAGAGCCAA GAGGCCTCAG ATTCGTCAAC : -224 36850922 : ATTCCTTTAA CGAGCTGAGA AACTTTTCAT GGTAAACTCA GCAGCTGAGT : 36850873 -223 : ATTCCTTTAA CGAGCTGAGA AACTTTTCAT GGTAAACTCA GCAGCTGAGT : -174 36850872 : AACAGGATGA TGGCACCACA ACAGGTAGAT AATCAAGGCA GGAGGTCAAA : 36850823 -173 : AACAGGATGA TGGCACCACA ACAGGTAGAT AATCAAGGCA GGAGGTCAAA : -124 36850822 : GCATTGGAGC CAACACCCGC CCAGGATGGG GTATAAAAGG GCTGGGAGGA : 36850773 -123 : GCATTGGAGC CAACACCCGC CCAGGATGGG GTATAAAAGG GCTGGGAGGA : -74 36850772 : GAGGAGGCTT CAGTCTCAGT GGTTCAGCTT TCCCAGCTGA TCTGAAGCTC : 36850723 -73 : GAGGAGGCTT CAGTCTCAGT GGTTCAGCTT TCCCAGCTGA TCTGAAGCTC : -24 36850722 : CTGTGCAGCC TCAGCCCAAC ACCATGACCT CTTCCTACAG CAGCTCCTCA : 36850673 -23 : CTGTGCAGCC TCAGCCCAAC ACCATGACCT CTTCCTACAG CAGCTCCTCA : 27 1 : M T S S Y S S S S : 9 36850672 : TGCCCTCTGG GTTGCACCAT GGCTCCTGGA GCAAGAAATG TCTCTGTCTC : 36850623 28 : TGCCCTCTGG GTTGCACCAT GGCTCCTGGA GCAAGAAATG TCTCTGTCTC : 77 10 : C P L G C T M A P G A R N V S V S : 26 36850622 : TCCCATCGAC ATTGGGTGCC AGCCTGGGGC AGAGGCCAAC ATTGCCCCCA : 36850573 78 : TCCCATCGAC ATTGGGTGCC AGCCTGGGGC AGAGGCCAAC ATTGCCCCCA : 127 27 : P I D I G C Q P G A E A N I A P : 42 36850572 : TGTGCCTTTT GGCCAACGTG GCACATGCCA ACCGAGTCCG TGTGGGGTCC : 36850523 128 : TGTGCCTTTT GGCCAACGTG GCACATGCCA ACCGAGTCCG TGTGGGGTCC : 177 43 : M C L L A N V A H A N R V R V G S : 59 36850522 : ACTCCCCTGG GCCGCCCCAG CCTCTGTCTG CCGCCTACCT GCCACACTGC : 36850473 178 : ACTCCCCTGG GCCGCCCCAG CCTCTGTCTG CCGCCTACCT GCCACACTGC : 227 60 : T P L G R P S L C L P P T C H T A : 76 36850472 : TTGTCCCTTG CCAGGGACCT GCCACATTCC TGGCAACATT GGAATCTGTG : 36850423 228 : TTGTCCCTTG CCAGGGACCT GCCACATTCC TGGCAACATT GGAATCTGTG : 277 77 : C P L P G T C H I P G N I G I C : 92 36850422 : GGGCCTATGG TGAAAACACC CTGAATGGCC ATGAGAAGGA GACCATGCAG : 36850373 278 : GGGCCTATGG TGAAAACACC CTGAATGGCC ATGAGAAGGA GACCATGCAG : 327 93 : G A Y G E N T L N G H E K E T M Q : 109 36850372 : TTCCTGAATG ACCGCCTGGC CAACTACCTG GAGAAGGTGC GCCAGCTGGA : 36850323 328 : TTCCTGAATG ACCGCCTGGC CAACTACCTG GAGAAGGTGC GCCAGCTGGA : 377 110 : F L N D R L A N Y L E K V R Q L E : 126 36850322 : GCAGGAGAAT GCGGAGCTGG AGGCCACACT CCTCGAGAGG AGCAAGTGCC : 36850273 378 : GCAGGAGAAT GCGGAGCTGG AGGCCACACT CCTCGAGAGG AGCAAGTGCC : 427 127 : Q E N A E L E A T L L E R S K C : 142 36850272 : ACGAGTCCAC CGTGTGCCCC GACTACCAGT CTTACTTCCA CACCATCGAG : 36850223 428 : ACGAGTCCAC CGTGTGCCCC GACTACCAGT CTTACTTCCA CACCATCGAG : 477 143 : H E S T V C P D Y Q S Y F H T I E : 159 36850222 : GAGCTCCAAC AGAAGGTGAG GTGTGGGATC GCTTGGGTGT GCTGGGTCTG : 36850173 478 : GAGCTCCAAC AGAAG : 492 160 : E L Q Q K : 164 36850172 : AGATGGCAGA GGCAAGACAG GAGGAATCCA TGTAAAGCTC AGAGAACTTT : 36850123 36850122 : GGGTTCTTGG TTTCTCTTGG ACATGATCAT AGACACCACA CGTGGAGAAG : 36850073 36850072 : GAGCCTAGGG CATGATGCTT TGTGTGTGAA CTGTCTTCCT GTTCTCCTCA : 36850023 36850022 : GATCCTGTGC AGCAAGGCCG AGAATGCCAG GCTGATTGTA CAAATTGACA : 36849973 493 : ATCCTGTGC AGCAAGGCCG AGAATGCCAG GCTGATTGTA CAAATTGACA : 541 165 : I L C S K A E N A R L I V Q I D : 180 36849972 : ATGCCAAGCT GGCTGCCGAT GACTTTAGGA TCAAGTAAGT CAGGCGGAGG : 36849923 542 : ATGCCAAGCT GGCTGCCGAT GACTTTAGGA TCAA : 575 181 : N A K L A A D D F R I K : 192 36849922 : AGGGCCAGGG TGACTCCTTC CCCACCCTCC ATCCCAATGC CCAAATACTT : 36849873 36849872 : GTTGAGTGAG GGAATCATTG TCATTTCTTC CTTGCTAGAT TCTCTACAGT : 36849823 36849822 : AAAATTTTCA TTACAATCGA AGCTGATGGA AGATGGAAGG GAAAACTCCT : 36849773 36849772 : CATTAATCCA AGCATATATG TTTGTCTTCC TTCATTTATT TCCCTAAAAT : 36849723 36849722 : GGAGGATAAG GCAGCCTGAG TTCATTAACC AGGAGCAAAA TGAGGTGATT : 36849673 36849672 : TGAAGGATGA ACTGAGCAAG ACAGCCATTG GGTTTCATAT ATAAGTCAGA : 36849623 36849622 : GGAGTCACTT ACAGATGAGT CTTTGTCCAG ATTTAATTAG GGAGCCCTAA : 36849573 36849572 : GGTACCAGGT ATAAGGTACC TAGGCAAAAA TGAGAGAGGG GAAGACAGCT : 36849523 36849522 : GAAAGCAAGG GATAAGGAGC CGCAGATCAC GATCAGGCAC CTGGTTATTG : 36849473 36849472 : CTTATCTTTG GTAACTGACA GCCCCTGCAA TGGCATGAGC GTTGGACTGG : 36849423 36849422 : GTCCCAAGAT GCATGATCTT ACGCAAGTCA GTTGATCTTC CTGAACTGCA : 36849373 36849372 : GTTGCCACAG AATACAATGG CAAAAATGTA TATTGTGCAA TGTAGTGTTG : 36849323 36849322 : TGATTTCTCC ATTAGACCAT GAGCTCTTTG AGAAGAGGGG CTGGGTCTAA : 36849273 36849272 : TTCACCTTTG AGGACAGAGG GCTAAACAGA GTGAATAAAT GAGGATCCAA : 36849223 36849222 : GGTGGTGTGG GAGGTAGGAA GCCAGGGCAG CCGAGAGGGG CTCTTGGGGG : 36849173 36849172 : CATTCTTTTT GACCCTGTAC CTCCTGTGAT GAAAGGCTGG AGAGTGAGCG : 36849123 576 : GCTGG AGAGTGAGCG : 590 193 : L E S E R : 197 36849122 : CTCCCTGCGC CAGCTGGTGG AGGCAGACAA GTGTGGGACA CAGAAGCTCC : 36849073 591 : CTCCCTGCGC CAGCTGGTGG AGGCAGACAA GTGTGGGACA CAGAAGCTCC : 640 198 : S L R Q L V E A D K C G T Q K L : 213 36849072 : TGGATGATGC GACCCTGGCC AAGGCCGACC TGGAGGCCCA GCAGGAGTCC : 36849023 641 : TGGATGATGC GACCCTGGCC AAGGCCGACC TGGAGGCCCA GCAGGAGTCC : 690 214 : L D D A T L A K A D L E A Q Q E S : 230 36849022 : CTGAAGGAGG AGCAGCTCTC CCTCAAGAGC AACCACGAGC AGGTGTGGCC : 36848973 691 : CTGAAGGAGG AGCAGCTCTC CCTCAAGAGC AACCACGAGC AG : 732 231 : L K E E Q L S L K S N H E Q : 244 36848972 : CTGGGCGCTC AAACTCCTGG GGAGGGCACT GGGCAGACAG GGGAGCTCCC : 36848923 36848922 : CAGCCCCGGG CTCTCAGAGC ATTGCCTGGC CTCAGCTGGC ATCAGGATGC : 36848873 36848872 : AGGGCTGAGG TGGGTCTGAG GGTCCAGAGG GCCTCTGTGG AAAGTGCAGA : 36848823 36848822 : CTTGCCTTGG GCATGAGGAA GGTGTGCAGG TGGGCTCTCC CGAATGCCCT : 36848773 36848772 : CTGGGCAAGA CTTTCCCATT TGCTTGTGTG TGGGACTCCC CTCCTACTGC : 36848723 36848722 : TTGCCAGGGG CGGGGTCCTG GTGCTGTCTG CTCCATCAAA GGCCCTTTCC : 36848673 36848672 : TCATGCAGGC TGTCTGTCCC TTCCTCCCTT CTGCAGGAAG TAAAGATTCT : 36848623 733 : GAAG TAAAGATTCT : 746 245 : E V K I L : 249 36848622 : GAGGAGTCAG CTGGGGGAGA AGCTCCGGAT TGAGCTGGAC ATTGAGCCCA : 36848573 747 : GAGGAGTCAG CTGGGGGAGA AGCTCCGGAT TGAGCTGGAC ATTGAGCCCA : 796 250 : R S Q L G E K L R I E L D I E P : 265 36848572 : CCATTGACCT GAACAGGGTG CTGGGGGAGA TGCGGGCTCA GTATGAGGCC : 36848523 797 : CCATTGACCT GAACAGGGTG CTGGGGGAGA TGCGGGCTCA GTATGAGGCC : 846 266 : T I D L N R V L G E M R A Q Y E A : 282 36848522 : ATGTTGGAGA CCAACCGCCA GGATGTGGAA CAGTGGTTCC AAGCCCAGGT : 36848473 847 : ATGTTGGAGA CCAACCGCCA GGATGTGGAA CAGTGGTTCC AAGCCCAG : 894 283 : M L E T N R Q D V E Q W F Q A Q : 298 36848472 : GAGTGGGGGG GGTATAGAAC CAGGGGGTAC CTGGCCTCCA TCTGGGCAGG : 36848423 36848422 : GAGGTGACCG TGTCTCTCTG TGCTCCAGTC TGAAGGCATC AGCCTGCAGG : 36848373 895 : TC TGAAGGCATC AGCCTGCAGG : 916 299 : S E G I S L Q : 305 36848372 : ACATGTCCTG CTCCGAGGAG CTGCAGTGCT GCCAGTCGGA GATCCTGGAG : 36848323 917 : ACATGTCCTG CTCCGAGGAG CTGCAGTGCT GCCAGTCGGA GATCCTGGAG : 966 306 : D M S C S E E L Q C C Q S E I L E : 322 36848322 : CTGAGATGCA CGGTGAATGC CCTGGAGGTG GAGCGCCAAG CCCAGCACAC : 36848273 967 : CTGAGATGCA CGGTGAATGC CCTGGAGGTG GAGCGCCAAG CCCAGCACAC : 1016 323 : L R C T V N A L E V E R Q A Q H T : 339 36848272 : CTTGGTACGT GTCCTTCACT CTCACTGCAC TGCAAATGCC CCGTGCCATG : 36848223 1017 : CTTG : 1020 340 : L : 340 36848222 : GCCTAGTAGC ATTTTATTTT GGAGGTCTCA CTACCCAAGT TTCTCCCACC : 36848173 36848172 : TGTTATCACC ATCAAAATTT GAGGCATGTA GCAGTTTCCC TTGGGGCCTT : 36848123 36848122 : GTATATTTTA TCCCCTTATT TCCCACTACA GAAGGACTGT CTGCAGAACT : 36848073 1021 : AAGGACTGT CTGCAGAACT : 1039 341 : K D C L Q N : 346 36848072 : CCCTGTGTGA AGCCGAGGAC CGCTTCGGCA CGGAGCTGGC CCAGATGCAG : 36848023 1040 : CCCTGTGTGA AGCCGAGGAC CGCTTCGGCA CGGAGCTGGC CCAGATGCAG : 1089 347 : S L C E A E D R F G T E L A Q M Q : 363 36848022 : AGCCTCATCA GCAACGTGGA GGAGCAGCTG TCTGAGATCC GGGCCGACCT : 36847973 1090 : AGCCTCATCA GCAACGTGGA GGAGCAGCTG TCTGAGATCC GGGCCGACCT : 1139 364 : S L I S N V E E Q L S E I R A D L : 380 36847972 : GGAGCGGCAA AACCAGGAGT ACCAGGTGCT GCTGGACGTG AAGACCCGGC : 36847923 1140 : GGAGCGGCAA AACCAGGAGT ACCAGGTGCT GCTGGACGTG AAGACCCGGC : 1189 381 : E R Q N Q E Y Q V L L D V K T R : 396 36847922 : TGGAGAATGA GATTGCCACG TACCGGAACC TTCTGGAAAG CGAGGACTGC : 36847873 1190 : TGGAGAATGA GATTGCCACG TACCGGAACC TTCTGGAAAG CGAGGACTGC : 1239 397 : L E N E I A T Y R N L L E S E D C : 413 36847872 : AAGTACGTGT GATCTGGGCA ATTCCTGGCC AAATTATTTA CTCAATTCTG : 36847823 1240 : AA : 1241 414 : K : 414 36847822 : ATGAGGTCCT CAGGGCAGCA GAAGGGCTGT CTCTATGTAG AATGAGGCTC : 36847773 36847772 : TCTGTGCACT CCTTTTCAGT GAGTCGTTGC CCTGTCCTGC ACACTCCATG : 36847723 36847722 : TGGTTGACAG AATGAAGGGA ATGACCATGC ACTTAGAGGA TATTTACCAG : 36847673 36847672 : GTCTCCACCG GGGCTGCTTG GGGTAGCCAT GGACTGATGA GAGTAGACAC : 36847623 36847622 : AGGGTCGCTG CTCAAACAGG AGATATGTCC ATAGATCCAG CAGATTTTTG : 36847573 36847572 : GACTTGGTTT TCTTTTCTTA AATTCTTCCT AGGAATTTTT ATTCTATAGG : 36847523 36847522 : ATAACTTTAA TCATGGAAGG CATTTTAGAA ACCACTTGTC TAGTCTAACC : 36847473 36847472 : CTGGAGGTGC TCACTAGGTG CTAATGGTCA CAGGGTCCAG CTGGGTCCAT : 36847423 36847422 : GTTCTGTTGT TTTGCAGTGG GGACTCCTTC CTCATGCCCC CACATGGCAC : 36847373 36847372 : TGAGACCCCA TTCATTTCTT GCCTCTCACT TCCCTCACCT TGTCTCTCTG : 36847323 36847322 : CAGACTCCCC TGCAATCCGT GCTCCACGTC TCCCTCCTGC GTGACTGCCC : 36847273 1242 : ACTCCCC TGCAATCCGT GCTCCACGTC TCCCTCCTGC GTGACTGCCC : 1288 415 : L P C N P C S T S P S C V T A : 429 36847272 : CCTGTGCTCC TCGCCCAAGC TGTGGCCCCT GCACCACCTG TGGGCCCACC : 36847223 1289 : CCTGTGCTCC TCGCCCAAGC TGTGGCCCCT GCACCACCTG TGGGCCCACC : 1338 430 : P C A P R P S C G P C T T C G P T : 446 36847222 : TGTGGAGCCA GCACCACCGG AAGCCGATTC TGAATTCCTG TGGACCCACA : 36847173 1339 : TGTGGAGCCA GCACCACCGG AAGCCGATTC TGAATTCCTG TGGACCCACA : *17 447 : C G A S T T G S R F : 456 36847172 : GGGGCTGGCT AAGGCGAGGG ATACCCAAAG AGAGATGCTT GTTATACCTT : 36847123 *18 : GGGGCTGGCT AAGGCGAGGG ATACCCAAAG AGAGATGCTT GTTATACCTT : *67 36847122 : TAGAAAATCT GGCTTCTAAC TTTCTGTATG TATAGGCCTG TCCAAAGGCT : 36847073 *68 : TAGAAAATCT GGCTTCTAAC TTTCTGTATG TATAGGCCTG TCCAAAGGCT : *117 36847072 : ATGAGATACC AGGGACAGTG GAATCTTGAT GGAAATCCTT CCTTTCCTGC : 36847023 *118 : ATGAGATACC AGGGACAGTG GAATCTTGAT GGAAATCCTT CCTTTCCTGC : *167 36847022 : TCTTGGTTTT CCCAGGTGAG CTCTATGCCC TCAGTGGCTG GATTGCAGCC : 36846973 *168 : TCTTGGTTTT CCCAGGTGAG CTCTATGCCC TCAGTGGCTG GATTGCAGCC : *217 36846972 : ACCCATGGTG GCTCAGAATA TCTGGATTGG AGAGGCATAA GGTTGAAAAG : 36846923 *218 : ACCCATGGTG GCTCAGAATA TCTGGATTGG AGAGGCATAA GGTTGAAAAG : *267 36846922 : CATTTTGGAG TAGGAACACG GCATGATTTA AAATTGCACT TGCACTTCAA : 36846873 *268 : CATTTTGGAG TAGGAACACG GCATGATTTA AAATTGCACT TGCACTTCAA : *317 36846872 : GAACACCAAC TTTAACTTGA AATTTTTATA GTTTATGACA AAGGAAGTGA : 36846823 *318 : GAACACCAAC TTTAACTTGA AATTTTTATA GTTTATGACA AAGGAAGTGA : *367 36846822 : AGAACAGACT TCACTGTCTG AGATTTCCCA CATTTCTTGG GTTGTTTCTA : 36846773 *368 : AGAACAGACT TCACTGTCTG AGATTTCCCA CATTTCTTGG GTTGTTTCTA : *417 36846772 : ACATTGGCAG CCTGGATTAT GGCCCTAGGG AGAGGGAAAT AGAATCAGAA : 36846723 *418 : ACATTGGCAG CCTGGATTAT GGCCCTAGGG AGAGGGAAAT AGAATCAGAA : *467 36846722 : TTGTACCTGA CCCTGTCTTT TCTAATTCCC TTCTCCTATC CTCCTGCCTC : 36846673 *468 : TTGTACCTGA CCCTGTCTTT TCTAATTCCC TTCTCCTATC CTCCTGCCTC : *517 36846672 : CCTATCTTGG AAACTGATTA AGTGGAAACT TTCCTTGTAT CAAATCCTGA : 36846623 *518 : CCTATCTTGG AAACTGATTA AGTGGAAACT TTCCTTGTAT CAAATCCTGA : *567 36846622 : GTTTTCTCTA CTTCAGGGTT TCTAGCTTTG ACAAAGGACC AGGCTTGCCT : 36846573 *568 : GTTTTCTCTA CTTCAGGGTT TCTAGCTTTG ACAAAGGACC AGGCTTGCCT : *617 36846572 : TTTCTGTGGC AACACAGCCT CTTACATATG GCTTCCATAG CTTCTTGCTA : 36846523 *618 : TTTCTGTGGC AACACAGCCT CTTACATATG GCTTCCATAG CTTCTTGCTA : *667 36846522 : TGTGAAAGGA ACTTTCAGAT TAAGAAATTT CTCTCTTTTT TCTCTATAAA : 36846473 *668 : TGTGAAAGGA ACTTTCAGAT TAAGAAATTT CTCTCTTTTT TCTCTATAAA : *717 36846472 : TTCTGACTCT CCAGACTTGT CTGGCTATAA CCCCTGTCCC TGTCTAATTC : 36846423 *718 : TTCTGACTCT CCAGACTTGT CTGGCTATAA CCCCTGTCCC TGTCTAATTC : *767 36846422 : TCCCAGTCTA AAATCTAAAC AATGACTTCA TTTTTTTCTA GTACTTTCTC : 36846373 *768 : TCCCAGTCTA AAATCTAAAC AATGACTTCA TTTTTTTCTA GTACTTTCTC : *817 36846372 : CTGAAGTATT GAAACCTATT GATTCAATGG GTAGAGATTT GCTAAGTATG : 36846323 *818 : CTGAAGTATT GAAACCTATT GATTCAATGG GTAGAGATTT GCTAAGTATG : *867 36846322 : ATGTGCTTCC ACCTCTTCTC TTCATACTCT CTACCTTCCT TACCATGATT : 36846273 *868 : ATGTGCTTCC ACCTCTTCTC TTCATACTCT CTACCTTCCT TACCATGATT : *917 36846272 : CAGCCACACT GGCCTTTCTG TTCCTTGGAC ATGCCTGGAG ACCTGTCCCT : 36846223 *918 : CAGCCACACT GGCCTTTCTG TTCCTTGGAC ATGCCTGGAG ACCTGTCCCT : *967 36846222 : GCTCTTCCTT CTCTCTGGGG TGCTCTTCCC CCTCCTTATA AATGTTCAGG : 36846173 *968 : GCTCTTCCTT CTCTCTGGGG TGCTCTTCCC CCTCCTTATA AATGTTCAGG : *1017 36846172 : TCAGCGGAAA TGTTCCTTCC TCTGAG : 36846147 *1018 : TCAGCGGAAA TGTTCCTTCC TCTGAG : *1043
Back to top

mRNA SEQUENCE
Reference sequence last updated on 2009-07-21 16:58:40
RefSeq ID NM_006771.3
GI 15431317
Length 2837 nucleotides
Download File | Text
Sequence
Legend: Blue = CDS, Red = UTR
-423 TAGTCCTCCT GCTACACCAC TGACCAACAG GAAAGTTTGT GTCTCCAGAG -374 -373 TGGACACATC CATAAAGAGG CCAAACCCAG TCAAGGTCTA AGCATCTGAT -324 -323 GGCTATAACT TTGCTTCTTT GAAAGATAAT AAAAAGCTTC TGACCTCCCA -274 -273 TCAACAGCCA ACCTGATTTC AAAGAGCCAA GAGGCCTCAG ATTCGTCAAC -224 -223 ATTCCTTTAA CGAGCTGAGA AACTTTTCAT GGTAAACTCA GCAGCTGAGT -174 -173 AACAGGATGA TGGCACCACA ACAGGTAGAT AATCAAGGCA GGAGGTCAAA -124 -123 GCATTGGAGC CAACACCCGC CCAGGATGGG GTATAAAAGG GCTGGGAGGA -74 -73 GAGGAGGCTT CAGTCTCAGT GGTTCAGCTT TCCCAGCTGA TCTGAAGCTC -24 -23 CTGTGCAGCC TCAGCCCAAC ACCATGACCT CTTCCTACAG CAGCTCCTCA 27 28 TGCCCTCTGG GTTGCACCAT GGCTCCTGGA GCAAGAAATG TCTCTGTCTC 77 78 TCCCATCGAC ATTGGGTGCC AGCCTGGGGC AGAGGCCAAC ATTGCCCCCA 127 128 TGTGCCTTTT GGCCAACGTG GCACATGCCA ACCGAGTCCG TGTGGGGTCC 177 178 ACTCCCCTGG GCCGCCCCAG CCTCTGTCTG CCGCCTACCT GCCACACTGC 227 228 TTGTCCCTTG CCAGGGACCT GCCACATTCC TGGCAACATT GGAATCTGTG 277 278 GGGCCTATGG TGAAAACACC CTGAATGGCC ATGAGAAGGA GACCATGCAG 327 328 TTCCTGAATG ACCGCCTGGC CAACTACCTG GAGAAGGTGC GCCAGCTGGA 377 378 GCAGGAGAAT GCGGAGCTGG AGGCCACACT CCTCGAGAGG AGCAAGTGCC 427 428 ACGAGTCCAC CGTGTGCCCC GACTACCAGT CTTACTTCCA CACCATCGAG 477 478 GAGCTCCAAC AGAAGATCCT GTGCAGCAAG GCCGAGAATG CCAGGCTGAT 527 528 TGTACAAATT GACAATGCCA AGCTGGCTGC CGATGACTTT AGGATCAAGC 577 578 TGGAGAGTGA GCGCTCCCTG CGCCAGCTGG TGGAGGCAGA CAAGTGTGGG 627 628 ACACAGAAGC TCCTGGATGA TGCGACCCTG GCCAAGGCCG ACCTGGAGGC 677 678 CCAGCAGGAG TCCCTGAAGG AGGAGCAGCT CTCCCTCAAG AGCAACCACG 727 728 AGCAGGAAGT AAAGATTCTG AGGAGTCAGC TGGGGGAGAA GCTCCGGATT 777 778 GAGCTGGACA TTGAGCCCAC CATTGACCTG AACAGGGTGC TGGGGGAGAT 827 828 GCGGGCTCAG TATGAGGCCA TGTTGGAGAC CAACCGCCAG GATGTGGAAC 877 878 AGTGGTTCCA AGCCCAGTCT GAAGGCATCA GCCTGCAGGA CATGTCCTGC 927 928 TCCGAGGAGC TGCAGTGCTG CCAGTCGGAG ATCCTGGAGC TGAGATGCAC 977 978 GGTGAATGCC CTGGAGGTGG AGCGCCAAGC CCAGCACACC TTGAAGGACT 1027 1028 GTCTGCAGAA CTCCCTGTGT GAAGCCGAGG ACCGCTTCGG CACGGAGCTG 1077 1078 GCCCAGATGC AGAGCCTCAT CAGCAACGTG GAGGAGCAGC TGTCTGAGAT 1127 1128 CCGGGCCGAC CTGGAGCGGC AAAACCAGGA GTACCAGGTG CTGCTGGACG 1177 1178 TGAAGACCCG GCTGGAGAAT GAGATTGCCA CGTACCGGAA CCTTCTGGAA 1227 1228 AGCGAGGACT GCAAACTCCC CTGCAATCCG TGCTCCACGT CTCCCTCCTG 1277 1278 CGTGACTGCC CCCTGTGCTC CTCGCCCAAG CTGTGGCCCC TGCACCACCT 1327 1328 GTGGGCCCAC CTGTGGAGCC AGCACCACCG GAAGCCGATT CTGAATTCCT *6 *7 GTGGACCCAC AGGGGCTGGC TAAGGCGAGG GATACCCAAA GAGAGATGCT *56 *57 TGTTATACCT TTAGAAAATC TGGCTTCTAA CTTTCTGTAT GTATAGGCCT *106 *107 GTCCAAAGGC TATGAGATAC CAGGGACAGT GGAATCTTGA TGGAAATCCT *156 *157 TCCTTTCCTG CTCTTGGTTT TCCCAGGTGA GCTCTATGCC CTCAGTGGCT *206 *207 GGATTGCAGC CACCCATGGT GGCTCAGAAT ATCTGGATTG GAGAGGCATA *256 *257 AGGTTGAAAA GCATTTTGGA GTAGGAACAC GGCATGATTT AAAATTGCAC *306 *307 TTGCACTTCA AGAACACCAA CTTTAACTTG AAATTTTTAT AGTTTATGAC *356 *357 AAAGGAAGTG AAGAACAGAC TTCACTGTCT GAGATTTCCC ACATTTCTTG *406 *407 GGTTGTTTCT AACATTGGCA GCCTGGATTA TGGCCCTAGG GAGAGGGAAA *456 *457 TAGAATCAGA ATTGTACCTG ACCCTGTCTT TTCTAATTCC CTTCTCCTAT *506 *507 CCTCCTGCCT CCCTATCTTG GAAACTGATT AAGTGGAAAC TTTCCTTGTA *556 *557 TCAAATCCTG AGTTTTCTCT ACTTCAGGGT TTCTAGCTTT GACAAAGGAC *606 *607 CAGGCTTGCC TTTTCTGTGG CAACACAGCC TCTTACATAT GGCTTCCATA *656 *657 GCTTCTTGCT ATGTGAAAGG AACTTTCAGA TTAAGAAATT TCTCTCTTTT *706 *707 TTCTCTATAA ATTCTGACTC TCCAGACTTG TCTGGCTATA ACCCCTGTCC *756 *757 CTGTCTAATT CTCCCAGTCT AAAATCTAAA CAATGACTTC ATTTTTTTCT *806 *807 AGTACTTTCT CCTGAAGTAT TGAAACCTAT TGATTCAATG GGTAGAGATT *856 *857 TGCTAAGTAT GATGTGCTTC CACCTCTTCT CTTCATACTC TCTACCTTCC *906 *907 TTACCATGAT TCAGCCACAC TGGCCTTTCT GTTCCTTGGA CATGCCTGGA *956 *957 GACCTGTCCC TGCTCTTCCT TCTCTCTGGG GTGCTCTTCC CCCTCCTTAT *1006 *1007 AAATGTTCAG GTCAGCGGAA ATGTTCCTTC CTCTGAG
Back to top

PROTEIN SEQUENCE AND DOMAIN INFORMATION
Reference sequence last updated on 2009-07-21 16:58:40
RefSeq ID NP_006762.3
GI 15431318
Isoelectric Point 4.4933
Molecular Weight 50479.8 Daltons
Length 456 amino acids
Download File | Text
Sequence
1 MTSSYSSSSC PLGCTMAPGA RNVSVSPIDI GCQPGAEANI APMCLLANVA 50 51 HANRVRVGST PLGRPSLCLP PTCHTACPLP GTCHIPGNIG ICGAYGENTL 100 101 NGHEKETMQF LNDRLANYLE KVRQLEQENA ELEATLLERS KCHESTVCPD 150 151 YQSYFHTIEE LQQKILCSKA ENARLIVQID NAKLAADDFR IKLESERSLR 200 201 QLVEADKCGT QKLLDDATLA KADLEAQQES LKEEQLSLKS NHEQEVKILR 250 251 SQLGEKLRIE LDIEPTIDLN RVLGEMRAQY EAMLETNRQD VEQWFQAQSE 300 301 GISLQDMSCS EELQCCQSEI LELRCTVNAL EVERQAQHTL KDCLQNSLCE 350 351 AEDRFGTELA QMQSLISNVE EQLSEIRADL ERQNQEYQVL LDVKTRLENE 400 401 IATYRNLLES EDCKLPCNPC STSPSCVTAP CAPRPSCGPC TTCGPTCGAS 450 451 TTGSRF
Head L1 L12 L2 Tail
1A 1B 2A 2B
Domain Name Probable Starting Amino Acid Position Probable Ending Amino Acid Position
Head 1 104
1A 105 139
L1 140 150
1B 151 251
L12 252 267
2A 268 286
L2 287 294
2B 295 415
Tail 416 456
Back to top

RELATED SEQUENCES AND MULTIPLE SEQUENCE ALIGNMENT
The following table shows the orthologous sequences in other organisms as indicated by NCBI HomoloGene ID 48240.
Information last updated on 2007-08-17 12:21:05
Organism NCBI Gene ID mRNA Accession Protein Accession Taxonomy division
Canis familiaris 490986 XM_548109.2 XP_548109.2 Mammals
Pan troglodytes 468258 XM_523647.2 XP_523647.2 Primates
Vertebrate ClustalW multiple sequence alignments
Multiple sequence alignments were created using ClustalW for vertebrate sequences and the results available for viewing, download and visualization. Please use the analysis tools to include other sequences.
Type of ClustalW alignment Download in FASTA format View file in FASTA format
Nucleotide file view
Protein file view

Back to top