Human Intermediate Filament Database

Intermediate Filament Details

Protein Name	keratin 78, K78
Former Protein Name	K5b
Gene Symbol	KRT78
Intermediate Filament Type	II
HGNC ID	28926
NCBI Gene ID	196374

INTEGRATED SEQUENCE VIEW
Information last updated on 2009-07-21 16:58:41
* variant associated with disease as a risk factor rather than a causal factor.
Note: Sequences are numbered according to latest reference sequence information. Discrepancies may exist with some publications.
Chromosome 12q13.13
Chromosome Strand -
Chromosome GI 51511728
Chromosome RefSeq ID NC_000012.9
51529045 : AGAAACTCAC ACACCTTGAC AATCTGTCTG TCCGTCTGCA GCTGCGTGAC : 51528996 -64 : AGAAACTCAC ACACCTTGAC AATCTGTCTG TCCGTCTGCA GCTGCGTGAC : -15 51528995 : TGTCTGTCTC TGCCATGTCT CTCTCCCCAT GCCGGGCCCA GAGGGGCTTC : 51528946 -14 : TGTCTGTCTC TGCCATGTCT CTCTCCCCAT GCCGGGCCCA GAGGGGCTTC : 36 1 : M S L S P C R A Q R G F : 12 51528945 : AGCGCTCGCT CAGCCTGTTC TGCTCGCTCA AGGGGCCGCA GCAGGGGAGG : 51528896 37 : AGCGCTCGCT CAGCCTGTTC TGCTCGCTCA AGGGGCCGCA GCAGGGGAGG : 86 13 : S A R S A C S A R S R G R S R G G : 29 51528895 : CTTCAGCAGC AGGGGCGGCT TCAGCAGCAG GAGCCTTAAT TCCTTTGGGG : 51528846 87 : CTTCAGCAGC AGGGGCGGCT TCAGCAGCAG GAGCCTTAAT TCCTTTGGGG : 136 30 : F S S R G G F S S R S L N S F G : 45 51528845 : GGTGCCTGGA AGGCTCTCGT GGGAGTACCT GGGGGTCAGG GGGTAGGCTG : 51528796 137 : GGTGCCTGGA AGGCTCTCGT GGGAGTACCT GGGGGTCAGG GGGTAGGCTG : 186 46 : G C L E G S R G S T W G S G G R L : 62 51528795 : GGGGTGCGGT TTGGGGAGTG GAGTGGTGGG CCTGGGCTCT CCCTGTGCCC : 51528746 187 : GGGGTGCGGT TTGGGGAGTG GAGTGGTGGG CCTGGGCTCT CCCTGTGCCC : 236 63 : G V R F G E W S G G P G L S L C P : 79 51528745 : TCCGGGGGGC ATCCAAGAAG TGACCATCAA CCAGAATCTG CTGACCCCAC : 51528696 237 : TCCGGGGGGC ATCCAAGAAG TGACCATCAA CCAGAATCTG CTGACCCCAC : 286 80 : P G G I Q E V T I N Q N L L T P : 95 51528695 : TGAAGATTGA GATCGATCCC CAGTTCCAGG TGGTGCGGAC GCAGGAGACC : 51528646 287 : TGAAGATTGA GATCGATCCC CAGTTCCAGG TGGTGCGGAC GCAGGAGACC : 336 96 : L K I E I D P Q F Q V V R T Q E T : 112 51528645 : CAGGAGATCA GAACCCTCAA CAACCAGTTT GCTTCCTTCA TTGACAAGGT : 51528596 337 : CAGGAGATCA GAACCCTCAA CAACCAGTTT GCTTCCTTCA TTGACAAG : 384 113 : Q E I R T L N N Q F A S F I D K : 128 51528595 : GAGGGTCAAC TCAGCCAAGC CCCTGTCTCT GTGCCTCCCT TGGAGGAGCT : 51528546 51528545 : GCTCTTGATG GACTTGGAAA TGGGAAGTTT GGCCTCCTTC TACCACTTTT : 51528496 51528495 : CTAATAACTT CTGCAGCAAA GAAGTCCCTC CTGTGGACTA ACTGGACTCT : 51528446 51528445 : CTCTGGCTAT GCTGAGGCCC TGTTGTTCCA TGATTGGGGC TCAGGGACAG : 51528396 51528395 : AGAACTGCCA GCCAGCGGGG GGAAGGCCCT GCCCCATTAG TCAGTCCAGT : 51528346 51528345 : CATTTTGTTG TGTTCAGAGT GTCATGGAAG GTCATGAGGC TTCCCCTGCC : 51528296 51528295 : CAGGTTGGGC AGGGGGACAG GGGAAAGGTG AGGCTGATGG GAGGGTCCCT : 51528246 51528245 : CAGGCTTTAC TTTCCAGAGG CTGTGCACAG GGAGTCCCAC AGGAGCCTCA : 51528196 51528195 : GGGATCCTCT GCTTTTGCTG CAGGTGCGGT TCCTGGAGCA GCAGAACAAG : 51528146 385 : GTGCGGT TCCTGGAGCA GCAGAACAAG : 411 129 : V R F L E Q Q N K : 137 51528145 : GTCCTGGAGA CGAAGTGGCA TCTGCTGCAG CAACAGGGGT TGAGTGGCAG : 51528096 412 : GTCCTGGAGA CGAAGTGGCA TCTGCTGCAG CAACAGGGGT TGAGTGGCAG : 461 138 : V L E T K W H L L Q Q Q G L S G S : 154 51528095 : CCAGCAGGGC CTGGAGCCTG TCTTTGAGGC CTGCCTGGAT CAGCTCAGGA : 51528046 462 : CCAGCAGGGC CTGGAGCCTG TCTTTGAGGC CTGCCTGGAT CAGCTCAGGA : 511 155 : Q Q G L E P V F E A C L D Q L R : 170 51528045 : AGCAGCTGGA GCAGCTCCAG GGAGAACGAG GGGCTCTGGA TGCTGAGTTG : 51527996 512 : AGCAGCTGGA GCAGCTCCAG GGAGAACGAG GGGCTCTGGA TGCTGAGTTG : 561 171 : K Q L E Q L Q G E R G A L D A E L : 187 51527995 : AAGGCCTGCC GGGACCAGGA GGAGGAGTAT AAGTCCAAGT AGGCACACTG : 51527946 562 : AAGGCCTGCC GGGACCAGGA GGAGGAGTAT AAGTCCAA : 599 188 : K A C R D Q E E E Y K S K : 200 51527945 : AAATTTCCCC ATGCCATGTG GGCGGGGTCT GGGATGACTC AGTTTGGGTC : 51527896 51527895 : TGTCAGCCAG GAGGTGTCCC ACATACTGAG CACCCAGAGG CACATGACTG : 51527846 51527845 : GCCTCCCCTC TACCCCTCCG CGTCCCCATT CCCCAGGCTC TCAGGTGCCC : 51527796 51527795 : ACCTGCTACA GGTAAACGAG GTGTCCCGCA GTCCCCAAGC AGATCTGGAG : 51527746 51527745 : AACCTTGGAG GAAAGGCAGG GAGACCGGTG TCCTACATGC CCCAGCTACA : 51527696 51527695 : AGGGCCCATG TTTCCGGTCA AGGCTGGGAA GGGCTTATTT AAACAATGCC : 51527646 51527645 : CCAGTGGCTT TTTTTATTCT TGAGAAATTC CTGTTCAGCG GGCTGTGGGC : 51527596 51527595 : TAAAGTGATT CAGATGTTCT CTGGTTCCAA AGAGGGAAGG GAATCAATTT : 51527546 51527545 : AGTGGGGCTG TCCCCAGGCC TGTGACACAA TTCACAGATG GGCTGTGGTT : 51527496 51527495 : CTGGGCTCCA CGCCTAGGTC ACCTGGTGGA GTGGAGAGAG CCCTGGACTA : 51527446 51527445 : ATAGGGGGCT TGGGTTGGGG CAACTGTGAG TGAGGGGTAG CTGTGCATCC : 51527396 51527395 : TGGGCAAGGC ATCTCATCTC TCCCGGACTT GGTTTCCCTT CTGTAAACTT : 51527346 51527345 : GGGAAATGTC ACCTGCCCTT CTGGCCTCCC AGGGCTATTG GGATAATGGG : 51527296 51527295 : ATGTGAGGTG GAGGAAGGAA GGTTCTGGAA GGAGCCCTGG ATTGGGGTCA : 51527246 51527245 : GAAGACCTGG GCTGGCTCTG CTTTGTCTAC CTAGTCATCT GTGGGGTCTT : 51527196 51527195 : GGTCAAATCA TCTAATCTCT CTGATAAAAC CCAAACTGCC TACCTCAAGT : 51527146 51527145 : GATGGGTGTG AGTAGCAAGT GGGAAAAGGT ATTCGAATGT GCCTTATAAA : 51527096 51527095 : CTGAAACAAT GTGGCTGTCG TCATCAAAAG GACATGGGCT GAAAGGGTGG : 51527046 51527045 : CACAGGTACA TAGCTAGGAC GTGGCAGGAA AGGAGAGAAG GGCTGGTTAT : 51526996 51526995 : TGTCTTGTTT GGGGGCATTC TAAGGCAAGG AGTCCTTTTC AGGGAGGTCA : 51526946 51526945 : TGCTCGGACA TGGGGGCATG AGCTCTGACC GTGGAGCCTC AAACTGCATC : 51526896 51526895 : CTTCTCTACT TATTTGGCAG GTATGAGGAG GAGGCCCACA GGCGTGCCAC : 51526846 600 : GTATGAGGAG GAGGCCCACA GGCGTGCCAC : 629 201 : Y E E E A H R R A T : 210 51526845 : ACTTGAGAAC GACTTTGTGG TCCTCAAGAA GGTGAGGGTG GGGGCCAGTG : 51526796 630 : ACTTGAGAAC GACTTTGTGG TCCTCAAGAA G : 660 211 : L E N D F V V L K K : 220 51526795 : CTCCACTTAC GTTCTGAGCA TCCACTGTGC ACGGAGCCTA GTCCTAGGCT : 51526746 51526745 : GGGAGGGAAA AGGTGGGAGG TCCTGATTTA GGACAGGCTA TCACTCTACC : 51526696 51526695 : TGCAGGGGTC CCCTGGGAAA ATGGGACATC TGCCTAGACA CAGGGGCCCC : 51526646 51526645 : AAGGCAAGAT CTGACTAAAG GACTGCTTGA CGAGCTCTTG ATGTCACTGC : 51526596 51526595 : AGGAGAGGGC GGGGAGGGAG AGGAAGAAGC AGAACTGGTT GTGATTAATC : 51526546 51526545 : AGGGAAGACT TCCTGAAGGT GATGTTGGGT CAATGTTGGG CAAAGGAGAG : 51526496 51526495 : AGCAGGACAG AGTGGGGCTG GAGGAGGAAG GAGGGGGTCT TGGGAGGCAT : 51526446 51526445 : GGTGGATGGG TGTTGAGCAG TGCATGAACA GAATTCCTGA GCCAGAGTAG : 51526396 51526395 : GGACCCCAAA GAGGAAGAGG GGGTTACGTG TTCTCTCTCC CCTTGTCTCC : 51526346 51526345 : AGGATGTGGA TGGGGTTTTC CTGAGCAAGA TGGAGTTGGA GGGCAAGCTG : 51526296 661 : GATGTGGA TGGGGTTTTC CTGAGCAAGA TGGAGTTGGA GGGCAAGCTG : 708 221 : D V D G V F L S K M E L E G K L : 236 51526295 : GAGGCTCTGA GAGAGTACCT CTACTTCTTG AAGCATCTGA ATGAAGAAGT : 51526246 709 : GAGGCTCTGA GAGAGTACCT CTACTTCTTG AAGCATCTGA ATGAAGAA : 756 237 : E A L R E Y L Y F L K H L N E E : 252 51526245 : GAGGCTCAAC CAAAGGGCAG GCTGCAGCCA AGAGAGAGGA CTGGGTGGGC : 51526196 51526195 : AGGCTTCCTG TGGCCATGAG GAGAATGGCC AAGAGGGGAA GTCTGTTAGG : 51526146 51526145 : GTGGCTTAGA TTCTGGGTCA TTCAGTCACT TGACAACCAA TTACTGAAAA : 51526096 51526095 : CTTACTATGT GAATTGCTAG GTCCTGGGGA TACATCAATG AATAACCAGA : 51526046 51526045 : AAAAAATCAC TACAGATAAA AAAATTGCTT TTTTTTTTTT TTGAGATGGA : 51525996 51525995 : ATCTTGCTCA GTTGCCCAGG CTGGAGTGCA GTGGTGCAAT CTCAGCTCAC : 51525946 51525945 : TGCAACCTCT GCCTCCCGGC TTCAAGCAAT TCTCTGCCTC AGCTTCCCAA : 51525896 51525895 : GTAGGTGGGA TTACAGGCAC CCGCCACTGC GGTCAGCTAA TTTTTGTATT : 51525846 51525845 : TTTAGTAGAG ATGGGGTTTC ACCATCTTAG CTAGGCTGGT CTTGAACTCC : 51525796 51525795 : TGACCTCATG ATCCACCCGC CTCGGCCTCC CAAAGTGCTG GGATTACAGG : 51525746 51525745 : CATGAGCCAC CACGCCCGAC TAAGTTTGCT TTCTATTGGG AGACAGACAA : 51525696 51525695 : TAAGCAACAG ACTTAGTAAA TAAGGAAATC ATATAGTATG GAAGAAGGTG : 51525646 51525645 : ATAAACGCAA TGGAAAAAAG GAAAATGAGA ACAGAGAAAG GAGGATTGGG : 51525596 51525595 : AACATGGAGC AGGTGCCAAC TTCAAATCAT GTGGCCAGGG TAGGCCTTAT : 51525546 51525545 : TTAGGAGATA AAATCTGAGC AAAGATTTGG AGGAGGTGAG GAAGGTCACC : 51525496 51525495 : ACGCAGGTGG GTTTCTGGGA TTCCAGGCAG TGGCTGCAGC CCACAGCGGG : 51525446 51525445 : AGTGTGCTGT CTGAGGAAAT GCAGGAAGGT CGGTGTGGCC AGAGTAGTAG : 51525396 51525395 : GAGCGAGAGG GAGAGGAGTA TGATAAGAGG TCTGAAGATG GCTGGGCACG : 51525346 51525345 : GTGGCTCATG CCTATAATCC CAGCACTTTG GGAGGCTGAG GCAGGTGGAT : 51525296 51525295 : CACCTGAGGT CAGGAGTTCG AGACCAGCCT AGTGAAACGC TGTCGCTACA : 51525246 51525245 : AAAACACAAA AATTAGCCAG GCTTGGTGGC AGGTGCTTGT AATCCCAGCT : 51525196 51525195 : ACTAGGGAGG CTGAGGGAGA AGAATGGCTT GAACCTGGAA GGCAGAGGTT : 51525146 51525145 : ACAGTGAGCC GAGATCACAC CACTGCACTC CAGCCTGGGC AACAGAGTAA : 51525096 51525095 : GACTCCATCT TAAAAAAAAA AAAGAAGAAG AAGAAAAAAA AAAGAGGCCT : 51525046 51525045 : GAGGAGTGAT GGGGGCTGGG TGATTTTGGG CCTTGCAGGC CATTTTCCAT : 51524996 51524995 : TAATGTCCAA GCTGCAAGAG ACTTCAGAGA CCACCTCCTA TGGCTCTCAT : 51524946 51524945 : TTTTGAATGA GGAGATCGAG TCCCATGGTG AGCAGGGCAT ACTCAAAGCC : 51524896 51524895 : ACCTGGGATG AATGGGGGTC ATGGCATGTA AGCAGAAATT CATCATCCTG : 51524846 51524845 : CTCAACCATC CTAGGCTTCA AGGGGAGAAG GAGCTGGGGG TGAGTGGACA : 51524796 51524795 : CTGAGTCTGT CTTCCCTGCA GGAGCTGGGC CAGCTCCAGA CCCAGGCCAG : 51524746 757 : GAGCTGGGC CAGCTCCAGA CCCAGGCCAG : 785 253 : E L G Q L Q T Q A S : 262 51524745 : CGACACGTCT GTGGTGCTGT CCATGGACAA CAACCGCTAC CTGGACTTCA : 51524696 786 : CGACACGTCT GTGGTGCTGT CCATGGACAA CAACCGCTAC CTGGACTTCA : 835 263 : D T S V V L S M D N N R Y L D F : 278 51524695 : GCAGCATCAT CACTGAGGTC CGCGCCCGGT ACGAGGAGAT CGCCCGGAGC : 51524646 836 : GCAGCATCAT CACTGAGGTC CGCGCCCGGT ACGAGGAGAT CGCCCGGAGC : 885 279 : S S I I T E V R A R Y E E I A R S : 295 51524645 : AGCAAGGCTG AGGCTGAGGC CTTGTACCAG ACCAAGGTGG TGGGACCTGG : 51524596 886 : AGCAAGGCTG AGGCTGAGGC CTTGTACCAG ACCAAG : 921 296 : S K A E A E A L Y Q T K : 307 51524595 : GGGGCAGCAC CATGCTGGAA ATGGCTAGGT CTCCATGCCC AAACTCTAGG : 51524546 51524545 : GTGGTCATCC ACCTCGATCC CATTGGGGCA GTTCCAGTTA CCTCCCTGAA : 51524496 51524495 : GGTCTGGGGC TGGGTGGGCA GGGCCATTTC CCCTCCAGGA GGGAGGCGAT : 51524446 51524445 : GCAGAGGAAC CGTGGGAGAT AAGCTTGGAC TTCTGGAAGT ATATCCCACT : 51524396 51524395 : GTGTCCTGGC TCAGGCGTTT AACCCACACT CCAAATAAGG AGTGAGAGGT : 51524346 51524345 : GGCTTTTCAA ACATGAGGAG ATGGTCAAAG GTGGCAGTCC TCTCAACTAA : 51524296 51524295 : TGGTGTCCCC TCTGTTCCCC TCTCAGTACC AGGAACTTCA GGTGTCTGCC : 51524246 922 : TACC AGGAACTTCA GGTGTCTGCC : 945 308 : Y Q E L Q V S A : 315 51524245 : CAGCTTCATG GGGACAGGAT GCAGGAAACG AAAGTCCAGA TCTCTCAGCT : 51524196 946 : CAGCTTCATG GGGACAGGAT GCAGGAAACG AAAGTCCAGA TCTCTCAGCT : 995 316 : Q L H G D R M Q E T K V Q I S Q L : 332 51524195 : ACACCAAGAG ATTCAGAGGC TGCAGAGTCA GACTGAGAAC CTCAAGAAGC : 51524146 996 : ACACCAAGAG ATTCAGAGGC TGCAGAGTCA GACTGAGAAC CTCAAGAAGC : 1045 333 : H Q E I Q R L Q S Q T E N L K K : 348 51524145 : AGGTAGATTC CCAGAGACCC CCAAATGTCC TCTCATTGCC TTTGTGCCTT : 51524096 1046 : AG : 1047 349 : Q : 349 51524095 : CAACTCACTT CCCAGTTCCT AGCTTCTCTC TCCAGTTGGG TTGCCAGTGG : 51524046 51524045 : TTTTGTGTCG AGGACCTTGA TAACTGGCTG GAGCTTTGGA TAATTTGGGG : 51523996 51523995 : AGAAGAGAAC TTCAAGCCCC ATCTAGGGTG AATTCAGCCT TCCTGCTGTG : 51523946 51523945 : ACTTCTAGCC ACATGTTGGC TTTCGTGGGA TAGTGCCACT GGATCGCACT : 51523896 51523895 : CCCCTGGCAT CGGGGAGGGG GCTGACAGCA TTGTAGCCTA TGTCCAGGTG : 51523846 51523845 : TACATCTTGC TTTCAGCCCC TTGGGGAGAT GGTTAATTCA TCTGTTTTCT : 51523796 51523795 : CTTTTCTTAT CTTTTCCTTT TCTTTTCTTT TTCTTTTTCT TTTTTTTTTT : 51523746 51523745 : TTTTTTGAGA CAGAGTCTTA CTCCACTGCC CAGGTTGGAG TTCAGTGGCG : 51523696 51523695 : TGATCTTGGC TTACTGCAAC CTCTGCCTCC GGGTTCAAGG GATTCTCCTG : 51523646 51523645 : CCTCAGCCTC TTGAGTAGCT GGAATTACAG GCATGTGCCA CCATGCTTGG : 51523596 51523595 : CTAATTTTTG CATTTTCAGT AGGGACGGGG TTTCACCATG TTGGCCAGGC : 51523546 51523545 : TGGTCTCAAA CTCCTGACCT CAAGTGATCT GCCCGCCTTG GCCTCCCAAA : 51523496 51523495 : GTGGTAGGAT TACAGGTGTG AGCCACTGCA CCCAGCCTCA TTTCTTTTCT : 51523446 51523445 : TTTTCTTTCT CTCTCTCTCT CTTTTTTTTG AGACAGAGTC TTACTCCACT : 51523396 51523395 : GCCCAGGCTG GAGTACAGTG GCGTGATCTT GGCTCACTAC AACCTCTGCC : 51523346 51523345 : TCCGGGTTCA AGGGATTCTC CTGCCTCAGC CTACTGAGTA GCTGGAATTA : 51523296 51523295 : CAGGCACTCA CCACCATGCT TGGCTAATTT TTGCATTTTT AATAGAGATG : 51523246 51523245 : GGATTTCACC ATGTTGGCCA GGCTGGTCTC AAACTCCTGA CCTCAAGTGA : 51523196 51523195 : TCTGCCCGCC TCGGCCTCCC AAAGTGGTGG GATTACAGTC GTGAGCCACT : 51523146 51523145 : GCACCCAGCT TCATCTCTTT TCTTTCTTTC TTTCTTCCTT CCTCCCTTCC : 51523096 51523095 : CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCCTCCTTCC TTCCTTCCTT : 51523046 51523045 : CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTCTCTC TCTCTCTCTC : 51522996 51522995 : TCTCTCTTTC TTTCTTTCCT TTCTTTCTTT CATGGAGTTT CACTGTTGTC : 51522946 51522945 : AGCCCGGACT GGAGTGCAAT GGCGTGATCT CGGCTTAATG CAACCTCCAC : 51522896 51522895 : CTCCCAGGTT CCAGCAATTC TGCCTCAGCC TCCCGAGTAG CTGAGATTAC : 51522846 51522845 : AGGTGCCTGC CACCACACCC GGCTAATTTT TGTATTTTTA GTAGAGACAG : 51522796 51522795 : GGTTTCACCA TGTTGGCCAA GCTGGTCTCG AACTCCTGAC ATCAGGTGAT : 51522746 51522745 : CCACCAGCTT CAGCCTCCCA AAGTGCTGGG ATTACAGGTG TGAGCCACCA : 51522696 51522695 : TGCTCAGCCC ACATCTCTTT TCTTATCTCT TCTTTTGACT CTTACTTCTC : 51522646 51522645 : AAGCCCAGCA GGGACTTTAA GGTCAAACAC TGAAGGTCCT GGTGCCCTGT : 51522596 51522595 : GGGGGAAGTT GGGAGCCAGG GCCTCAGAGA GTAGGTGAGG TGGGCGGCAG : 51522546 51522545 : GGTGGGGCTA ACTTCTCCTT AGGTAGATGC ATTACAAGGG TCAGAAATAG : 51522496 51522495 : AGGAAGAGAT TGGCAAGGGG AGGGAGGCCG TTTCCTGCTC CTCCTGCGGT : 51522446 51522445 : GTAGAGACCT CACTTCTAGA TGTGAAGTGT TATGAATTCT CAAATTGTTA : 51522396 51522395 : AGTATTCTTG CACTCATATT TCCTAAACCC AAAATATCAA TTTGGGTGTC : 51522346 51522345 : AATGGAGGAT GGAGAGCAGA GACCACAGAG TCAGGCCATT TCCTCAAGCA : 51522296 51522295 : CTACAGCTTG ATTCAAAAGT CACATGTGGT CCCTTGACTC CCAAGCAGAG : 51522246 51522245 : CCCTCTGGGG AGGGTTCTTG GAGTATCCAG AACCATCCTC CTGGTTCTTG : 51522196 51522195 : TTTGCAATGA GAAGCAGGGC TTGAGATGAA TGTGATGAAT CCTCTTACTC : 51522146 51522145 : AATTTGCTGC CACTATGTTT CACCAACAAA TTTGGACCCC TTGCTTTGGA : 51522096 51522095 : GTCCTCTGGG GTGGCTATTA AGATCCAGAT TCCTGGCCTC CTGGCAGAGC : 51522046 51522045 : TGAGGAGTCA GAATCTCTAA GGATGGGGCC CAGAAACCTG CTTTTTAAAT : 51521996 51521995 : GAGGTTGCCC AGCTGGTTCT GAAGCATGTG GTCTTGAGAG TCCAGTGGCA : 51521946 51521945 : GCACGCAGGA GTGTGTATGT GTACTGGGTA CCTGGGTCTG GGAATCACAG : 51521896 51521895 : CTCCTCACAC AGCAATGTGC CTTTCCCAGG AGAATCCCTC CTGGAGATAT : 51521846 51521845 : AGCACTGTCC CCTGCTCCTT TTCCTGCACA AACATGATGA ACTGGGCTCC : 51521796 51521795 : CCTGTGCAGG CCCACGTGGG TTAGGATCCC AGTTCTGCCA CTCTTCTTTC : 51521746 51521745 : TGAGCCTCAG TTTCTTCATC TATAGAGTAG AGATTATGTT TCTATCCACA : 51521696 51521695 : GAGTGGGAAT CGATAATAAC AGCCTTTAGA CAATTCCTTC TTTCCTGAGT : 51521646 51521645 : CAGATGTGAG GGCAAATCAA CTGTAAGGCT GATAAAGACA GGGATCTCAT : 51521596 51521595 : CCTTCCTCTA GCTTTCTATT GTAAGTAAAA GGATTATATT TTCTTTTTTT : 51521546 51521545 : TTTTTTTTGA GAAGGAGTCT CACTCTGTCA CCCAGGCTGG AATGCAGTGG : 51521496 51521495 : CGCGATCTCG GCTCACTGCA ACCTCCGCCT CCCGGGTTCA AGCGATTCTC : 51521446 51521445 : CTACCTCAGC CTCCTGAGTA GCTGGGACTA CAGGTGTGTG CCACCATGCC : 51521396 51521395 : CGGCTAATTT TTTTTTTTTA TTTTTAGTAG AGACAGGGTT TCGCCGTATT : 51521346 51521345 : AGCCAGGATG GTCTCTATCT CCTGACCTAG TGATCTGCCC ACCTCAGCCT : 51521296 51521295 : CCCAAAGTGC TGGAATTACA GGCGTGAGCC ACCGCGCCCG GTAGAGATTA : 51521246 51521245 : TATTTTTCAA GTCCCAAATT GAGGCATATG TTTTGATGTA CTCTGACAAC : 51521196 51521195 : AGGACAAAGT ATTTGAAATG GGACTGTCTG AAAAAAATGA GAACCATTGT : 51521146 51521145 : GACCCTCAGG GGGAGCCTTG CAGATAGTGA TCCATGGTAC AGGAAGAGCT : 51521096 51521095 : TTAAGCACCC TGGGAGAGGT GCCGAGGGCT GGGGGTGGGA AGAAATAGGG : 51521046 51521045 : AAAGAGCACT TGGGGAGGTG GCACAGGAGT TGTACTAGTG TCCTAGGCCT : 51520996 51520995 : GTCATGACAA ATCACCACAA ATCGGGTGGC TTAAAACAAC AGAAATGTAA : 51520946 51520945 : TCTCTCCCAG TCCTGGAGCC TTGAAGTCTG AAGTCAAGGT GTTGGCGGGG : 51520896 51520895 : CCGTGCTCCC TCTGAAGGTG CAGCGAGAGT CCTCCCTGGG TCTTGCTAGC : 51520846 51520845 : TTCTGCAGGC TTCAGGAGCT CCTTGGCATT TTTCGTCTTA TTGCTGCATC : 51520796 51520795 : ATTCCCATCT CTGCCTCTCT CTTCTTCTTT CTATTTTTTG AGATGGAGTC : 51520746 51520745 : TTGCTCTGTT GCCAGGCTGG AGTGCAGTGG CATGATCTTG GCTCACTGCA : 51520696 51520695 : ACCTCCACCT CCCGGGTTCA AGCAATTCTC CTGCCTCAGC CTCCCGAGTA : 51520646 51520645 : GCTGGGACTA CAGGTGCGTG CCACTATGGT CAGCTAATTT TTTTATTTTT : 51520596 51520595 : ATTTTTAGTA GAGATGGGGT TTTACCGTGT TAGCCAGGAT TGTCTCGAAC : 51520546 51520545 : TCCTCACCTT GTAATTCACC TGCCTCAGCC TCCTAAAGTG CTAGGATTAC : 51520496 51520495 : AGGCGTGAGC CACCATGCCC AGCCCTGCCT CTCTCTTCTG ATGAGCTCTT : 51520446 51520445 : CTCTCTGTGT CTGTCTCTGT GTTCTCTCTT CTATTCATAA GGACACCAGT : 51520396 51520395 : CATTGGATTT AGGGCTCACC CTAAATATGG TACGATATGA TCATGAGATC : 51520346 51520345 : CTTAATTAAT TATATCTGTA AAGACCCTAC TTCCAATAAG ATCACATTCT : 51520296 51520295 : GGGGTTCTGG GTGGACATGA AAGTTTTGGG GGATACTCTT CAACCTACTG : 51520246 51520245 : CAGGAGGTAA GGAAGTGAGG GAAGCAATAC CTTCCCTTAG AATGAGAGGA : 51520196 51520195 : GCCTGTTGCA GGGGTGGTGT TGGTACAGAC GGCCATGGAT AATTTTGAGC : 51520146 51520145 : TCATAAGATT ATGATCCGCC CCAGCCTTCA AGTGATATCC ACAGTGGGTG : 51520096 51520095 : CTTTGAGAGG CTATGTTGGA CTTACAACCA CCTTCTCGCT CATTTCTACC : 51520046 51520045 : CCGCTTCCAG AACGCCAGCC TGCAGGCCGC CATCACTGAT GCTGAGCAGC : 51519996 1048 : AACGCCAGCC TGCAGGCCGC CATCACTGAT GCTGAGCAGC : 1087 350 : N A S L Q A A I T D A E Q : 362 51519995 : GTGGGGAGCT GGCCCTCAAG GACGCTCAGG CCAAGGTGGA CGAGCTGGAG : 51519946 1088 : GTGGGGAGCT GGCCCTCAAG GACGCTCAGG CCAAGGTGGA CGAGCTGGAG : 1137 363 : R G E L A L K D A Q A K V D E L E : 379 51519945 : GCTGCTCTGA GGATGGCCAA GCAGAACCTG GCCCGGCTGC TGTGCGAGTA : 51519896 1138 : GCTGCTCTGA GGATGGCCAA GCAGAACCTG GCCCGGCTGC TGTGCGAGTA : 1187 380 : A A L R M A K Q N L A R L L C E Y : 396 51519895 : CCAGGAGCTG ACGAGCACGA AGCTTTCCCT GGATGTGGAG ATTGCCACTT : 51519846 1188 : CCAGGAGCTG ACGAGCACGA AGCTTTCCCT GGATGTGGAG ATTGCCACTT : 1237 397 : Q E L T S T K L S L D V E I A T : 412 51519845 : ACCGCAGGCT GCTGGAGGGC GAGGAGTGCA GGTGAGGGAG GCTTGGAGGG : 51519796 1238 : ACCGCAGGCT GCTGGAGGGC GAGGAGTGCA G : 1268 413 : Y R R L L E G E E C R : 423 51519795 : ACCTGGGAAT ATGAGTTTGG GGAGGAGGAT GGGATGCCAA CACAGTGAGC : 51519746 51519745 : TGCTTGCTAA AGAGGATTCT GAGAGATTTC CTGACATTGT GAGTTGCTAA : 51519696 51519695 : GGGCAACCGA CGCTGCAGAG AGGGATTTTA AGTTGGAGAC TGTGGATTTT : 51519646 51519645 : ATCTGCTGAG AGGGTGGGTG ACCTGCTTTG AGGGGCTTAA AAGCTCGTGG : 51519596 51519595 : GGATGCATTC TTTGTAGTAT TCCTTAGCGC ATCCCCCTCT TGTCCTTTTC : 51519546 51519545 : CCCCTAGGAT GTCTGGGGAG TGCACCAGCC AGGTCACTAT CTGTGAGTAT : 51519496 1269 : GAT GTCTGGGGAG TGCACCAGCC AGGTCACTAT CT : 1303 424 : M S G E C T S Q V T I : 434 51519495 : CAGGGGACTT TAGGGATGGG ATCCCCATGG GGAGCTGATG ACCCTGCTCT : 51519446 51519445 : GACCCGGTGC GTTTCTTGGC AGCCTCGGTG GGAGGCAGCG CTGTCATGTC : 51519396 1304 : CCTCGGTG GGAGGCAGCG CTGTCATGTC : 1331 435 : S S V G G S A V M S : 444 51519395 : TGGAGGAGTT GGTGGAGGCT TGGGGAGCAC TTGTGGACTC GGTAGTGGGA : 51519346 1332 : TGGAGGAGTT GGTGGAGGCT TGGGGAGCAC TTGTGGACTC GGTAGTGGGA : 1381 445 : G G V G G G L G S T C G L G S G : 460 51519345 : AAGGCAGCCC TGGGTCCTGC TGCACCAGCA TTGTGACTGG AGGCTCCAAC : 51519296 1382 : AAGGCAGCCC TGGGTCCTGC TGCACCAGCA TTGTGACTGG AGGCTCCAAC : 1431 461 : K G S P G S C C T S I V T G G S N : 477 51519295 : ATCATTCTGG GCTCTGGGAA GGACCCTGTT TTGGATTCCT GCTCTGTGTC : 51519246 1432 : ATCATTCTGG GCTCTGGGAA GGACCCTGTT TTGGATTCCT GCTCTGTGTC : 1481 478 : I I L G S G K D P V L D S C S V S : 494 51519245 : TGGCTCCAGC GCTGGCTCCA GCTGCCACAC CATCCTGAAG AAGACAGTTG : 51519196 1482 : TGGCTCCAGC GCTGGCTCCA GCTGCCACAC CATCCTGAAG AAGACAGTTG : 1531 495 : G S S A G S S C H T I L K K T V : 510 51519195 : AGTCGAGTCT GAAGACATCC ATCACCTACT GAGCGACCCA GCAGCCACCT : 51519146 1532 : AGTCGAGTCT GAAGACATCC ATCACCTACT GAGCGACCCA GCAGCCACCT : *18 511 : E S S L K T S I T Y : 520 51519145 : CCTTCCTGAA CACATTTGGC CCACTCCCCC CATCAGCCGG CTCTGCAAGG : 51519096 *19 : CCTTCCTGAA CACATTTGGC CCACTCCCCC CATCAGCCGG CTCTGCAAGG : *68 51519095 : CCAACTCCGT GTCCGCTGCC CACAGCCCAA GCCAGCCCAC AGCGGATGCT : 51519046 *69 : CCAACTCCGT GTCCGCTGCC CACAGCCCAA GCCAGCCCAC AGCGGATGCT : *118 51519045 : GCAAAAATCA ATAAAGTCTC CCCTCCTGCT GTT------- : 51519013 *119 : GCAAAAATCA ATAAAGTCTC CCCTCCTGCT GTTAAAAAAA : *158
Back to top

mRNA SEQUENCE
Reference sequence last updated on 2009-07-21 16:58:41
RefSeq ID NM_173352.2
GI 89357931
Length 1785 nucleotides
Download File | Text
Sequence
Legend: Blue = CDS, Red = UTR
-64 AGAAACTCAC ACACCTTGAC AATCTGTCTG TCCGTCTGCA GCTGCGTGAC -15 -14 TGTCTGTCTC TGCCATGTCT CTCTCCCCAT GCCGGGCCCA GAGGGGCTTC 36 37 AGCGCTCGCT CAGCCTGTTC TGCTCGCTCA AGGGGCCGCA GCAGGGGAGG 86 87 CTTCAGCAGC AGGGGCGGCT TCAGCAGCAG GAGCCTTAAT TCCTTTGGGG 136 137 GGTGCCTGGA AGGCTCTCGT GGGAGTACCT GGGGGTCAGG GGGTAGGCTG 186 187 GGGGTGCGGT TTGGGGAGTG GAGTGGTGGG CCTGGGCTCT CCCTGTGCCC 236 237 TCCGGGGGGC ATCCAAGAAG TGACCATCAA CCAGAATCTG CTGACCCCAC 286 287 TGAAGATTGA GATCGATCCC CAGTTCCAGG TGGTGCGGAC GCAGGAGACC 336 337 CAGGAGATCA GAACCCTCAA CAACCAGTTT GCTTCCTTCA TTGACAAGGT 386 387 GCGGTTCCTG GAGCAGCAGA ACAAGGTCCT GGAGACGAAG TGGCATCTGC 436 437 TGCAGCAACA GGGGTTGAGT GGCAGCCAGC AGGGCCTGGA GCCTGTCTTT 486 487 GAGGCCTGCC TGGATCAGCT CAGGAAGCAG CTGGAGCAGC TCCAGGGAGA 536 537 ACGAGGGGCT CTGGATGCTG AGTTGAAGGC CTGCCGGGAC CAGGAGGAGG 586 587 AGTATAAGTC CAAGTATGAG GAGGAGGCCC ACAGGCGTGC CACACTTGAG 636 637 AACGACTTTG TGGTCCTCAA GAAGGATGTG GATGGGGTTT TCCTGAGCAA 686 687 GATGGAGTTG GAGGGCAAGC TGGAGGCTCT GAGAGAGTAC CTCTACTTCT 736 737 TGAAGCATCT GAATGAAGAA GAGCTGGGCC AGCTCCAGAC CCAGGCCAGC 786 787 GACACGTCTG TGGTGCTGTC CATGGACAAC AACCGCTACC TGGACTTCAG 836 837 CAGCATCATC ACTGAGGTCC GCGCCCGGTA CGAGGAGATC GCCCGGAGCA 886 887 GCAAGGCTGA GGCTGAGGCC TTGTACCAGA CCAAGTACCA GGAACTTCAG 936 937 GTGTCTGCCC AGCTTCATGG GGACAGGATG CAGGAAACGA AAGTCCAGAT 986 987 CTCTCAGCTA CACCAAGAGA TTCAGAGGCT GCAGAGTCAG ACTGAGAACC 1036 1037 TCAAGAAGCA GAACGCCAGC CTGCAGGCCG CCATCACTGA TGCTGAGCAG 1086 1087 CGTGGGGAGC TGGCCCTCAA GGACGCTCAG GCCAAGGTGG ACGAGCTGGA 1136 1137 GGCTGCTCTG AGGATGGCCA AGCAGAACCT GGCCCGGCTG CTGTGCGAGT 1186 1187 ACCAGGAGCT GACGAGCACG AAGCTTTCCC TGGATGTGGA GATTGCCACT 1236 1237 TACCGCAGGC TGCTGGAGGG CGAGGAGTGC AGGATGTCTG GGGAGTGCAC 1286 1287 CAGCCAGGTC ACTATCTCCT CGGTGGGAGG CAGCGCTGTC ATGTCTGGAG 1336 1337 GAGTTGGTGG AGGCTTGGGG AGCACTTGTG GACTCGGTAG TGGGAAAGGC 1386 1387 AGCCCTGGGT CCTGCTGCAC CAGCATTGTG ACTGGAGGCT CCAACATCAT 1436 1437 TCTGGGCTCT GGGAAGGACC CTGTTTTGGA TTCCTGCTCT GTGTCTGGCT 1486 1487 CCAGCGCTGG CTCCAGCTGC CACACCATCC TGAAGAAGAC AGTTGAGTCG 1536 1537 AGTCTGAAGA CATCCATCAC CTACTGAGCG ACCCAGCAGC CACCTCCTTC *23 *24 CTGAACACAT TTGGCCCACT CCCCCCATCA GCCGGCTCTG CAAGGCCAAC *73 *74 TCCGTGTCCG CTGCCCACAG CCCAAGCCAG CCCACAGCGG ATGCTGCAAA *123 *124 AATCAATAAA GTCTCCCCTC CTGCTGTTAA AAAAA
Back to top

PROTEIN SEQUENCE AND DOMAIN INFORMATION
Reference sequence last updated on 2009-07-21 16:58:41
RefSeq ID NP_775487.2
GI 89357932
Isoelectric Point 5.8307
Molecular Weight 56865.7 Daltons
Length 520 amino acids
Download File | Text
Sequence
1 MSLSPCRAQR GFSARSACSA RSRGRSRGGF SSRGGFSSRS LNSFGGCLEG 50 51 SRGSTWGSGG RLGVRFGEWS GGPGLSLCPP GGIQEVTINQ NLLTPLKIEI 100 101 DPQFQVVRTQ ETQEIRTLNN QFASFIDKVR FLEQQNKVLE TKWHLLQQQG 150 151 LSGSQQGLEP VFEACLDQLR KQLEQLQGER GALDAELKAC RDQEEEYKSK 200 201 YEEEAHRRAT LENDFVVLKK DVDGVFLSKM ELEGKLEALR EYLYFLKHLN 250 251 EEELGQLQTQ ASDTSVVLSM DNNRYLDFSS IITEVRARYE EIARSSKAEA 300 301 EALYQTKYQE LQVSAQLHGD RMQETKVQIS QLHQEIQRLQ SQTENLKKQN 350 351 ASLQAAITDA EQRGELALKD AQAKVDELEA ALRMAKQNLA RLLCEYQELT 400 401 STKLSLDVEI ATYRRLLEGE ECRMSGECTS QVTISSVGGS AVMSGGVGGG 450 451 LGSTCGLGSG KGSPGSCCTS IVTGGSNIIL GSGKDPVLDS CSVSGSSAGS 500 501 SCHTILKKTV ESSLKTSITY
Head L1 L12 L2 Tail
1A 1B 2A 2B
Domain Name Probable Starting Amino Acid Position Probable Ending Amino Acid Position
Head 1 111
1A 112 146
L1 147 158
1B 159 259
L12 260 276
2A 277 295
L2 296 303
2B 304 424
Tail 425 520
Back to top

RELATED SEQUENCES AND MULTIPLE SEQUENCE ALIGNMENT
The following table shows the orthologous sequences in other organisms as indicated by NCBI HomoloGene ID 65261.
Information last updated on 2007-08-17 12:21:09
Organism NCBI Gene ID mRNA Accession Protein Accession Taxonomy division
Rattus norvegicus 685672 XM_001064779.1 XP_001064779.1 Rodents
Canis familiaris 486514 XM_543640.2 XP_543640.2 Mammals
Pan troglodytes 451922 XM_509082.2 XP_509082.2 Primates
Mus musculus 332131 NM_212487.3 NP_997652.2 Rodents
Vertebrate ClustalW multiple sequence alignments
Multiple sequence alignments were created using ClustalW for vertebrate sequences and the results available for viewing, download and visualization. Please use the analysis tools to include other sequences.
Type of ClustalW alignment Download in FASTA format View file in FASTA format
Nucleotide file view
Protein file view

Back to top