Human Intermediate Filament Database

Intermediate Filament Details

Protein Name	keratin 39, K39
Former Protein Name	Ka35
Gene Symbol	KRT39
Intermediate Filament Type	I
HGNC ID	32971
NCBI Gene ID	390792

INTEGRATED SEQUENCE VIEW
Information last updated on 2009-07-21 17:00:08
* variant associated with disease as a risk factor rather than a causal factor.
Note: Sequences are numbered according to latest reference sequence information. Discrepancies may exist with some publications.
Chromosome 17q21.2
Chromosome Strand -
Chromosome GI 51511734
Chromosome RefSeq ID NC_000017.9
36376670 : CACAGACCTG GAACAAACTA AAGCCAGACA CATACTATGG ACACCAAGGG : 36376621 -36 : CACAGACCTG GAACAAACTA AAGCCAGACA CATACTATGG ACACCAAGGG : 14 1 : M D T K G : 5 36376620 : CTGTACAACA ACCAATTCTC CTTCAACCCC ATGTCAAAAC TGCTCTAGGA : 36376571 15 : CTGTACAACA ACCAATTCTC CTTCAACCCC ATGTCAAAAC TGCTCTAGGA : 64 6 : C T T T N S P S T P C Q N C S R : 21 36376570 : TTACAAATGT TAGTACCATC TCTTCTAACA ACGGCTGCCA TCCTGGTGGC : 36376521 65 : TTACAAATGT TAGTACCATC TCTTCTAACA ACGGCTGCCA TCCTGGTGGC : 114 22 : I T N V S T I S S N N G C H P G G : 38 36376520 : CTTACAGTCA ACAACTGTCA ACCAGCTGGC CACGTTCTCA GAATTCCCTG : 36376471 115 : CTTACAGTCA ACAACTGTCA ACCAGCTGGC CACGTTCTCA GAATTCCCTG : 164 39 : L T V N N C Q P A G H V L R I P W : 55 36376470 : GGACCAGGGC TGCCAACCCA CTCCTCGCTT TTGTCGCAAG CCCATCTACC : 36376421 165 : GGACCAGGGC TGCCAACCCA CTCCTCGCTT TTGTCGCAAG CCCATCTACC : 214 56 : D Q G C Q P T P R F C R K P I Y : 71 36376420 : TAATGAACAA CTTCAATGCC CGTTTTTCTC TGGATGACTG CAGCTGGTAT : 36376371 215 : TAATGAACAA CTTCAATGCC CGTTTTTCTC TGGATGACTG CAGCTGGTAT : 264 72 : L M N N F N A R F S L D D C S W Y : 88 36376370 : GGTGAAGGCA TCAACAGTAA TGAGAAGGAG ACCATGCAAA TCTTGAACGA : 36376321 265 : GGTGAAGGCA TCAACAGTAA TGAGAAGGAG ACCATGCAAA TCTTGAACGA : 314 89 : G E G I N S N E K E T M Q I L N E : 105 36376320 : GCGCCTTGCT AACTACCTGC AAAAGGTGCG AATGCTAGAA CGAGAGAATG : 36376271 315 : GCGCCTTGCT AACTACCTGC AAAAGGTGCG AATGCTAGAA CGAGAGAATG : 364 106 : R L A N Y L Q K V R M L E R E N : 121 36376270 : CTGAACTGGA ATCTAAAATC CAGGAAGAAA GTAACAAAGA GCTCCCTGTT : 36376221 365 : CTGAACTGGA ATCTAAAATC CAGGAAGAAA GTAACAAAGA GCTCCCTGTT : 414 122 : A E L E S K I Q E E S N K E L P V : 138 36376220 : CTATGTCCTG ATTACCTGTC TTACTACACT ACCATTGAGG AGCTCCAGCA : 36376171 415 : CTATGTCCTG ATTACCTGTC TTACTACACT ACCATTGAGG AGCTCCAGCA : 464 139 : L C P D Y L S Y Y T T I E E L Q Q : 155 36376170 : GAAGGTAAGA TTCCTAAGAA CCTGTTTAAT CGTGTTGTGA ATTAATGGTT : 36376121 465 : GAAG : 468 156 : K : 156 36376120 : TCCAAGCAAC AGTTATTTGC TAAACTTTAA TATTTTTTGT TCAGTTGATG : 36376071 36376070 : CTGAAAATTT TTTTGAAGAA TAGAAAAATT TCTTGAGTGA AATTGTCATC : 36376021 36376020 : TTGAGGCAGC ATTCAGAGTC TGATAGTATT TCTGGTCAGG CGCAGTGATG : 36375971 36375970 : CACACCTGTA ATCCTAACAC TTTGGGAGGC TGAGGCAGAC AGATCACTTG : 36375921 36375920 : AGCCCAGGAG TTCTAGACCA TCCTGGGCAA CATGATGAAA TTCCATCCTT : 36375871 36375870 : ACACACACAC ACACACACAC ACACATACAC ACACAAAAAA AAATTAGATG : 36375821 36375820 : GGCGTGGTGG CACATGCCTG TGGTCCCAGC TACTTGGGAG GCTGAGGTGG : 36375771 36375770 : GAGGATCACT TGAGCCCAAG AGGTTGAGGC TGCCATGAGC CAAGATCCTG : 36375721 36375720 : CCACTGCACT CCAGCCCAGA CAAAAGTGAG ACTATGTCTT TAAAAATCAG : 36375671 36375670 : AAACAAAAAG AAGAGTCTCA TGGTGTTTCC TTTCTCCAGA AATACACTCT : 36375621 36375620 : ACCATTATAA CTAGATGACT CAGGACCAAA AGATGTTAAC AGCAAGTTGT : 36375571 36375570 : TGCCATTTTT TAAATAAAAA TAGGGAAACA GAGATCAGAG AAAATAAATT : 36375521 36375520 : TTGCTTTAAT GAGTTTCTAA GCAATTTAGT TTTTATCCAT TTTTCAACCA : 36375471 36375470 : TCACCACCTT TTTCTCCTTT TATGCTTATG TTATCATCTC CACATTGCTT : 36375421 36375420 : GGTTTGTTTC TACACCAAAC CTAAGTTTGT TATGCACAGA CGTATTCTGC : 36375371 36375370 : TACTACATAT CTGGATTTAT TCAGTTTTAT TCATTCAACA AATGTTTACT : 36375321 36375320 : GAGCAGCAAC AACATTGGGC CAAACATTGT TCTAGATTCT GGGAAAATAT : 36375271 36375270 : TGGTGACCTT TAAAAAGTCC CTGCCCTCAT GGAGTTGACA TTCTAGTGGA : 36375221 36375220 : TCATGGTATT TATATAAATT TAGGATGGAT TTTATTTTAT TTTTTATTTA : 36375171 36375170 : TTTATTTATG TATTTATTGA GATGGAGTCT CACTCTGTCA CCAGGCTGGA : 36375121 36375120 : GTGCAATGGC GCGATCTCTG CTCACTGCAA CCTCCAGCTC CCAGGTTCAA : 36375071 36375070 : GCGATTCTCC CTCCTCTGCC TCTCTAGTAG CTGGGTCTAC AGGCACGCAC : 36375021 36375020 : CACCACACCC AGATAATTTT TGTATTTTTT TTTTTTTTTG AGACGGAGTC : 36374971 36374970 : TCGCTCTGTC TCCCAGGCTG CAGTGCAGTG GCGCGATCTC GGCTCACTGC : 36374921 36374920 : TAGCTCCGCT TCCTGGGTTC ATGCCATTCT CCTGCCTCAG CCTCCCAAGT : 36374871 36374870 : AGCTGGGACT ACAGGCGCCC GCCACCACGC CCAGCTAATT TTTTTTTTTT : 36374821 36374820 : TTATATTTTT AGTAGAGACG GGGTTTCACC GTGTTAGCCA GGATGGTCTT : 36374771 36374770 : GATCTCCTGA CCTCGTGATC TACCCGCCTC GGCCTCCCAA AGTGCTGGGA : 36374721 36374720 : TTACAGGCGT GAGCCACTGC GCCCGGCCAA TTTTTGTATT TTTTAGTAGA : 36374671 36374670 : GACAGGGTTT CACCATGTTG GCCAGGATGG TCTTGATCTC TTGACCTCGT : 36374621 36374620 : GATCCGCCCG CCTCAGCCTC CCAAGTGCTG ATATTACATG GGTGAGCCAC : 36374571 36374570 : TGCTCTCAGC CTGGATTTTT TAACAACAAC AACAAAAAAA ATACTTAAAA : 36374521 36374520 : GTTTCTAGTT AAGTACTTTT TGCTGATCTT TTAGGAAAAT AACAGGAAAT : 36374471 36374470 : CTGACTTTCT GAAGTTTTCC AAGCTTTGTG AGCATAGCTA TGAAGATTAA : 36374421 36374420 : TAAAAAGTCT ACTTAGCCTT CCCCTGTTAC TTGACACACA CACAAACCCC : 36374371 36374370 : TTGGTTCTTA AAGAAGGAAA TCTTGGTGTT TGCTTCATTT GTGTGTACAA : 36374321 36374320 : TCTCTTAATT CTAGATCTTG TGTACCAAGG CCGAGAATTC CAGACTGGTC : 36374271 469 : ATCTTG TGTACCAAGG CCGAGAATTC CAGACTGGTC : 504 157 : I L C T K A E N S R L V : 168 36374270 : TCGCAAATTG ACAACACCAA ACTGACTGCA GATGACTTGA GAGCCAAGTA : 36374221 505 : TCGCAAATTG ACAACACCAA ACTGACTGCA GATGACTTGA GAGCCAA : 551 169 : S Q I D N T K L T A D D L R A K : 184 36374220 : AGCCCACCCA ACACCGTCAT CAATGACAGA GCTCACCCTG AGTCTGACCG : 36374171 36374170 : AGATGCCCTC AACAAAATTG TCCCCATGTC TACTAACCCT CTTGCCCCAG : 36374121 36374120 : ATGATGTTGG CACAAGCCCA GAAAAGACTT TCAAATTCAA TGAATGATTA : 36374071 36374070 : AGATTAATAA CTGCTCACAT GTATACAGTA CCTATAGTTT CTAACTTGTG : 36374021 36374020 : AACCCATTTG ATTACCTACA CAATAGTTCA GTAAAATAGA TAGGACTAAT : 36373971 36373970 : ATATTGTTAC TCTCTTTAAG GTGAGAAATC TGTGGCTTAG TGAGGCTAAG : 36373921 36373920 : TTACTCACCC AAAGGTAAGC ATAACTAGCA CAAGTCAAAA CCGAAACTTG : 36373871 36373870 : GACACATGTT TTCTGAGCCC TAATCCAGTG CTTTCTTCAC TTACATTGCA : 36373821 36373820 : TTGCCACTAG GGGCAGAGGA AGGACAATAA ATTCCCATAT CTCAAAGAAC : 36373771 36373770 : AGCAATGTAG ATCCCCCTAG CAAACTAATT TGGGAATAAT AATTAAGTTA : 36373721 36373720 : TGATCTATAT CAAATGGTTT CACCTCCAAA GAGAATAAAA CTTCTAATAG : 36373671 36373670 : AAATACACTA AGTGAGGTGC CCAGAGCAAA ATGCAGATGA GAGTTCTGCT : 36373621 36373620 : TGGCTTGGTT TGCATCATCT CCTTTCAGAT GTCTCTCTTT TCCCATCTGG : 36373571 36373570 : TTTTTAAAGA TACGAAGCTG AGGTGTCTCT ACGCCAGCTG GTAGAGTCAG : 36373521 552 : A TACGAAGCTG AGGTGTCTCT ACGCCAGCTG GTAGAGTCAG : 592 185 : Y E A E V S L R Q L V E S : 197 36373520 : ATGCCAATGG CCTCAAGCAG ATCCTGAATG TGCTGACCCT GGGCAAGGCC : 36373471 593 : ATGCCAATGG CCTCAAGCAG ATCCTGAATG TGCTGACCCT GGGCAAGGCC : 642 198 : D A N G L K Q I L N V L T L G K A : 214 36373470 : GACCTAGAGG CACAAGTCCA GTCTCTGAAA GAGGAGCTCC TTTGCCTCAA : 36373421 643 : GACCTAGAGG CACAAGTCCA GTCTCTGAAA GAGGAGCTCC TTTGCCTCAA : 692 215 : D L E A Q V Q S L K E E L L C L K : 231 36373420 : GAACAACCAC AAAGAGGTGA GACAAAGACC AATAGAGTAA TCACAAGCTA : 36373371 693 : GAACAACCAC AAAGAG : 708 232 : N N H K E : 236 36373370 : AGTCCCTAAA AGTAGCATCA GTTCCTTTGA GTTGCACCTG ACAAAGGGTG : 36373321 36373320 : TGCCCGCTTG TATTAGTTCG TTCTCACACT GCTATAAAGA AATAACTGAG : 36373271 36373270 : AGTAGGTAAT TTATAAAGGA CAGAAGTGTA ACTGAGTCAC AGTTCCACAT : 36373221 36373220 : GGCTGGGGAG GCCTCAGGAA ACTTACAATC ATGGCTTAAG GGGAAGCAGG : 36373171 36373170 : CACATCTCAC TTGGCAGCAG GAGACAGAGA GAGACCAAAG GGGGAAGAGC : 36373121 36373120 : CCTTTATAAA ACTATCAGAT CTTGTGAGAA CTCACTCACT ATCCTAAGAA : 36373071 36373070 : CAGCATGGGG GACACCACCC CCATGATCCA ATCTCCTCCC ACTAGGTCCC : 36373021 36373020 : TCCCTTGACA CATGGGAATT ATGGGAATTA CAATTCGAGA TGAGATTTGG : 36372971 36372970 : GTGGGGACAC AGAGCCAAAC CACTGCTACG TACTACTCTG GTTTAGCCCT : 36372921 36372920 : GAAAATACCT ACTGCTACTA GCACTGGTTC AAGGTAGTAT TTCAAATCCA : 36372871 36372870 : CTGGCTCCAA CACAATATCT GGAGCCATAA GGGGAAGAAA GGCCTCCAAC : 36372821 36372820 : ATCCCCTCCA GCTTTTCTAC AAGAAGGAAC CCAATTTTTC TGTCCTTACA : 36372771 36372770 : GTCTTCCCAT GTTTGTAGGC ATCCCTATAC AGGCTTCTGC CACCTCCCAT : 36372721 36372720 : TGGTACAAGT CAATATTGGT GCAAGTCAAT ATTGGCACAA TCCCGTATTT : 36372671 36372670 : GCACCATAGA GACTATAATC TCTCATGATC AATTCCACCT TTATCCTGTT : 36372621 36372620 : TCACCCATTA TCCAGCCCTG GAAATGATCT AAATTTTTTG GAACTCTGGT : 36372571 36372570 : CTTGCTACTC ATTTTTTTTT AATTTTGCAC ACATTTAAAC ACACAGTCCT : 36372521 36372520 : ACCTGAAAGA GTCTTAAATC ATTTTATAGC ATCTCAATAA CACCTGTAAA : 36372471 36372470 : TCATGTATTC CTTTGTTGTG GGCTATATTT TAGACACAAT TAAGCTAAAT : 36372421 36372420 : CGTAGCAGTT AGAGTGAAAC AAGAACACAA AGGGGTTATC TGTTCACCAA : 36372371 36372370 : GTGACTTCAC AGTCTTTTTC TTTCCTTAGG AAATCAATTC TTTACAGTGT : 36372321 709 : G AAATCAATTC TTTACAGTGT : 729 237 : E I N S L Q C : 243 36372320 : CAGCTTGGGG AGAGACTTGA CATTGAAGTG ACTGCTGCCC CTTCTGCTGA : 36372271 730 : CAGCTTGGGG AGAGACTTGA CATTGAAGTG ACTGCTGCCC CTTCTGCTGA : 779 244 : Q L G E R L D I E V T A A P S A D : 260 36372270 : CCTAAACCAG GTTCTACAAG AAATGAGATG TCAATATGAG CCCATCATGG : 36372221 780 : CCTAAACCAG GTTCTACAAG AAATGAGATG TCAATATGAG CCCATCATGG : 829 261 : L N Q V L Q E M R C Q Y E P I M : 276 36372220 : AGACAAACCG CAAAGATGTG GAACAGTGGT TCAACACGCA GGTGGGGGAT : 36372171 830 : AGACAAACCG CAAAGATGTG GAACAGTGGT TCAACACGCA G : 870 277 : E T N R K D V E Q W F N T Q : 290 36372170 : ATAGAAAAGT CAAAAACAAT AAGCTGATGC TGCATTTCTA GGGCCCTTTA : 36372121 36372120 : ATCAAAGTCA TGTTTTCCTC CCATAATATT CTCAGTCTCT GGCTGTGTGT : 36372071 36372070 : TTCAGATAGA GGAGCTGAAT CAACAAGTGG TGACCAGCTC TCAACAGCAG : 36372021 871 : ATAGA GGAGCTGAAT CAACAAGTGG TGACCAGCTC TCAACAGCAG : 915 291 : I E E L N Q Q V V T S S Q Q Q : 305 36372020 : CAATGCTGCC AAAAGGAGAT CATAGAACTG AGACGCAGTG TGAACACTCT : 36371971 916 : CAATGCTGCC AAAAGGAGAT CATAGAACTG AGACGCAGTG TGAACACTCT : 965 306 : Q C C Q K E I I E L R R S V N T L : 322 36371970 : GGAGGTTGAA CTGCAGGCCC AGCATCGAAT GGTACTGAGC AAGCTGACCA : 36371921 966 : GGAGGTTGAA CTGCAGGCCC AGCATCGAAT G : 996 323 : E V E L Q A Q H R M : 332 36371920 : AGCCTAGCTC AGCAAAGATG GAAACAGTCC CTTACACCTG TGTGCTGCAG : 36371871 36371870 : TATTTCCCAA ACTGTGTCTT TCAGAACAAT AGTTCCTCAT TTGTTAAAGC : 36371821 36371820 : GTCTATGGCT GAAAAAGAGC TTTGTGGCCA AATAAGTCTA CGAAACGCTG : 36371771 36371770 : CACTAAACCA AGGTTAAACA GGGTGCCTTC CTGTGAGCCA TTAATAAGCT : 36371721 36371720 : AATATACACC ATGAATCTCC AGGAAGGGGG TATATGGTAT TCAGCATTCC : 36371671 36371670 : AAAACTTATT TGACTGTGGA TCCCCCCACT TTTTTTAGAA CATCTCATGG : 36371621 36371620 : TATTAATGAT TCATGAAGTA CACTTTGGGA AACACTGGGA GAGCATTTTA : 36371571 36371570 : TTATATGCAA AGCATTTTTA CAAGCTATCA CATGAGATTT ATAAAGCAAT : 36371521 36371520 : CCTAAGAGGG GGGGTGGCAT AATTATTAAC GAATGTTACA GATGAGGCTC : 36371471 36371470 : CAAGAGCTAA AGTGATTTTC CCAAGCAAAT CCAAGGTAAG TTTCAGCCCA : 36371421 36371420 : CCTATTTTAT AGAGACACTG AGATCCTGAG ACATTAAGAA ACTCATCCAA : 36371371 36371370 : AGTCACAAAA GAAATAAGAG TCTGAGCCAG AGTTTAGATT CCAAAGCCAG : 36371321 36371320 : TATCATTCTG TCTCATGATA ATGCCTCTCT GAAGTAGAGA ATTGCTTACA : 36371271 36371270 : TGCTCTGATG TGAAGGCTTT TGGGAAGACC TTGCCCCACA CTGGTTTTGT : 36371221 36371220 : CACCAGCTAG TCATGTGACC TTGGACAACA TATTGAACCA CTTGAACCTC : 36371171 36371170 : AGTTTTCTCA TCTATAAAAA TTGGGATAAT CATGCAAATA ATAGGCTATT : 36371121 36371120 : AAAACCTAAA ATCCCATCAT TATCCATAGA CTTACAGAAT GATAGAGCAG : 36371071 36371070 : GAATGAAATT TACTCATCAG TTTCAACTTT CATATTTTAC ATATAAAGGA : 36371021 36371020 : ATTGATCTGG TGGATAAATT GTATATGGTA AAACATTGCT TCCTTCCTTT : 36370971 36370970 : TTTAAGACAC GAACACTCAC TGAATGAAGT GCCATGGTAA TGCTTTTTTT : 36370921 36370920 : TTTTTTTCTT TTTGAGATGG AGTCTCACTC TGTCGCCCAG ACTGGACAGC : 36370871 36370870 : AGTGGCACGA TCTCGGGTCA CTGCAACCTC CACCTCCCGG GTTCAAGCAA : 36370821 36370820 : TTCTCTGCCT TAGCCTCCCA AGTAGCTGGG ATTACAGGTG CCCACCAGAA : 36370771 36370770 : CACCCAGCTA ATTTTTTGTA TTTTTAGTAG AGACGGGGTT TCACCATCTT : 36370721 36370720 : GGCCAGGCTG GTCTTGAACT CCTGACCTTG TGATCCACCC ACCTGGGCCT : 36370671 36370670 : CCCAAAGTGC TGGGATTATA GGCGTGAGCC ACTGCGCCCA GCCAGTAATG : 36370621 36370620 : CATTTTTAAT GCCTGGGTGT GCATTAAGTT ATTATTTTTT CTCTCCTAAG : 36370571 36370570 : TAGGAAAGTG TGGTGCGAGA CTATTGGTTG GTCAAGAAAG AGAAAGTGAA : 36370521 36370520 : ACAAATACTT ACAGAGAAGC AAAAAGAGAA AGAGAGAAAG AGGGAAGAGA : 36370471 36370470 : TAAAGGAAAG CAGATTTTAG CATAGTTGAT CATTTGGGTT TTGGATTTAT : 36370421 36370420 : TTGATTAGGA AACAATAAAT AAAGTGCTTG GAGATCTATC AGTAGTGTCA : 36370371 36370370 : CAAAGAAACC ATTTTTTTTA AATGATACAG GTCACAGGTG ACCTGGGCTT : 36370321 36370320 : AAAGGAGTCA TTATAAATCC TACTATCCTT CTCCATGGTA GAGAGATTCC : 36370271 997 : AGAGATTCC : 1005 333 : R D S : 335 36370270 : CAAGAGTGCA TCCTAACGGA GACAGAGGCT CGCTACACGG CCTTGCTGAC : 36370221 1006 : CAAGAGTGCA TCCTAACGGA GACAGAGGCT CGCTACACGG CCTTGCTGAC : 1055 336 : Q E C I L T E T E A R Y T A L L T : 352 36370220 : CCAGATCCAG AGTCTGATTG ATAACCTGGA AGCTCAGCTG GCAGAGATCC : 36370171 1056 : CCAGATCCAG AGTCTGATTG ATAACCTGGA AGCTCAGCTG GCAGAGATCC : 1105 353 : Q I Q S L I D N L E A Q L A E I : 368 36370170 : GGTGTGCCCT GGAAAGACAG AACCAAGAAT ACGAGATCCT GCTGGACGTC : 36370121 1106 : GGTGTGCCCT GGAAAGACAG AACCAAGAAT ACGAGATCCT GCTGGACGTC : 1155 369 : R C A L E R Q N Q E Y E I L L D V : 385 36370120 : AAGTCCCGGC TGGAATGTGA GATTACCACA TACCGCAGCC TTCTGGAGAG : 36370071 1156 : AAGTCCCGGC TGGAATGTGA GATTACCACA TACCGCAGCC TTCTGGAGAG : 1205 386 : K S R L E C E I T T Y R S L L E S : 402 36370070 : CTCGGATGGC AAGTATGTAA AATAACAGCA ACTTCTATGA CAAAAAAGTG : 36370021 1206 : CTCGGATGGC AA : 1217 403 : S D G K : 406 36370020 : TAAATGAACG CAGATATATG TACTGCCACT GGCAACAGGG GTCAAGTGCT : 36369971 36369970 : TTGTTTGACC TTCTTGCCAG TGATGGGGAG CTTGGACAGA GGCATCCACA : 36369921 36369920 : CACCCTCTCA AGCTGTGCCA TGAGGAAGAC TTGCAATTGT AACCTTATCC : 36369871 36369870 : AAATTTGAGG CATTGGCTGA CCTGAGCTGT TCTGAAGAGC CCATGGGCCA : 36369821 36369820 : GGTTAATTTC TTATAGGTTG CTTACCTTCT TAGAGTTTTA AAAATTACTA : 36369771 36369770 : GAGAAAAAAT TATTTCCCCA TAGATGAATA TTCCTGGTGA CCATTACAGA : 36369721 36369720 : TGTTTCCCCA CTGAGATGAA CGTCTGATTT TCATGAGCTT GTACAAAACA : 36369671 36369670 : ACCCAGGCTC CTTTGGAGGA ACATTCTGCT CAGGCTGAAA CCCCTAACCC : 36369621 36369620 : TATCTAGCCA CTAGTCCTTG AGGCCAACAG AAGCATGTAC ACATGTATGT : 36369571 36369570 : TTTAGCATCT TTTTTAAAAA ATAAAAGTTA TAATTTTTGT AAGCAATAAG : 36369521 36369520 : AAGCTAACCA ACCCATAAGT AAACATATAT GGAGGATGAG TTCTTTGAAG : 36369471 36369470 : CAACTCAGTC CAAACTAAAA CCCCAGAGAC TTAGTTACAA TTGCAAAGGA : 36369421 36369420 : GACCTACTTC CCGAAAATAA TCAGTGAACT CTTCACAGCA TTCTTTTAAT : 36369371 36369370 : TGGCATGACC ACATTATGTG AGCACAATGG TCATCAATGC TGTCACCTTT : 36369321 36369320 : AGGAGCTGTG ATCATATACC AAAATACCTC GAATCATCAA AGAAAGATTA : 36369271 36369270 : TGTTTATAAA AAGAGTGTTT ACTATGAACT GCTTTTTACT TCAGTTCTCT : 36369221 36369220 : AAAAACTATG CATAGACAGC CAGAAGGCAC TTTGAAGCTT CCTGATGACA : 36369171 36369170 : CAGTGAGGAC TCTTTCATAG CTGGGGTTCA GGCCACCACT ATTAGTATGA : 36369121 36369120 : CTAACTCCTC AATGAGAAAA ATATCTGGTT AATTTCCATT CCTCGGATAA : 36369071 36369070 : TAATGCCCTC AACTTGTTCC TTATCACTGT TGATCCTGTG GGTTTAGTTT : 36369021 36369020 : CCATTATATC CATTCTGCAG ATGAAAAACT AAAGGTTGAG TGCGTTAAAT : 36368971 36368970 : GACTTAGCTG AGGTCACCAG CTGGTAAAGG ACAGAGCTGG TCTCTGCCTC : 36368921 36368920 : AGTCTTTTGA CTGCTAGTGC AGTATTCTTT CCACAATGTG ATGGTATTGA : 36368871 36368870 : CTAATGGAAA CTTACATAAT CGAATACTTC TAAACCTAGG ATGCTGATTT : 36368821 36368820 : CCAATGGATT TAATCTGATT CTTTTTCTTC CAGTAACTAC AGTACAAAAT : 36368771 36368770 : AAATGAATAA GCATTTAGAA GTATGTACTT GTCTTGAGCA ACACGTGTTA : 36368721 36368720 : AAAAAATTAG CCACAATCAT TTTTCTCCAT GACCATCATC GCCTTCCCTC : 36368671 36368670 : AATCACAGCT AAAATTGTGT TTTTTTTCCT TAGGCGTCCC TGTTACCCAC : 36368621 1218 : GCGTCCC TGTTACCCAC : 1234 407 : R P C Y P : 411 36368620 : GTGCCACCAA ATGTGAGCCT TCCCCTTGGA CATCTTGTAA GTCCGGAGCC : 36368571 1235 : GTGCCACCAA ATGTGAGCCT TCCCCTTGGA CATCTTGTAA GTCCGGAGCC : 1284 412 : R A T K C E P S P W T S C K S G A : 428 36368570 : ATAGAAAGCA CGGCCCCAGC TTGCACATCC TCATCCCCCT GCAGCTTAAA : 36368521 1285 : ATAGAAAGCA CGGCCCCAGC TTGCACATCC TCATCCCCCT GCAGCTTAAA : 1334 429 : I E S T A P A C T S S S P C S L K : 445 36368520 : GGAGCACTGC AGTGCCTGCG GACCCCTGTC CCGGATACTG GTTAAAATTT : 36368471 1335 : GGAGCACTGC AGTGCCTGCG GACCCCTGTC CCGGATACTG GTTAAAATTT : 1384 446 : E H C S A C G P L S R I L V K I : 461 36368470 : GCACCATCAC CAAGGAGATT AAGGATGGGA AGGTCATTTC TTCTTACGAG : 36368421 1385 : GCACCATCAC CAAGGAGATT AAGGATGGGA AGGTCATTTC TTCTTACGAG : 1434 462 : C T I T K E I K D G K V I S S Y E : 478 36368420 : CATGTGCAGC CTTGTTTCAT CATCAGACCT GCCAAAGTCT AACATCCCAA : 36368371 1435 : CATGTGCAGC CTTGTTTCAT CATCAGACCT GCCAAAGTCT AACATCCCAA : *8 479 : H V Q P C F I I R P A K V : 491 36368370 : GGTGATGAAA ATGACCCACA TTTATGAAAC AGAGGCCAAT ACATGCTCCT : 36368321 *9 : GGTGATGAAA ATGACCCACA TTTATGAAAC AGAGGCCAAT ACATGCTCCT : *58 36368320 : GCCAGAGAGG TTTAAGAAAA CTCCCCAGTC CCTTAAGGTA CTTAGTTTCT : 36368271 *59 : GCCAGAGAGG TTTAAGAAAA CTCCCCAGTC CCTTAAGGTA CTTAGTTTCT : *108 36368270 : TACTACTACA GCGGGTCCCC ATTGCTAGGT AGAATATCTT TTATTCTGCT : 36368221 *109 : TACTACTACA GCGGGTCCCC ATTGCTAGGT AGAATATCTT TTATTCTGCT : *158 36368220 : CCTTCCCTAA CTCACCACTG CTAACA : 36368195 *159 : CCTTCCCTAA CTCACCACTG CTAACA : *184
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mRNA SEQUENCE
Reference sequence last updated on 2009-07-21 17:00:08
RefSeq ID NM_213656.3
GI 148277619
Length 1696 nucleotides
Download File | Text
Sequence
Legend: Blue = CDS, Red = UTR
-36 CACAGACCTG GAACAAACTA AAGCCAGACA CATACTATGG ACACCAAGGG 14 15 CTGTACAACA ACCAATTCTC CTTCAACCCC ATGTCAAAAC TGCTCTAGGA 64 65 TTACAAATGT TAGTACCATC TCTTCTAACA ACGGCTGCCA TCCTGGTGGC 114 115 CTTACAGTCA ACAACTGTCA ACCAGCTGGC CACGTTCTCA GAATTCCCTG 164 165 GGACCAGGGC TGCCAACCCA CTCCTCGCTT TTGTCGCAAG CCCATCTACC 214 215 TAATGAACAA CTTCAATGCC CGTTTTTCTC TGGATGACTG CAGCTGGTAT 264 265 GGTGAAGGCA TCAACAGTAA TGAGAAGGAG ACCATGCAAA TCTTGAACGA 314 315 GCGCCTTGCT AACTACCTGC AAAAGGTGCG AATGCTAGAA CGAGAGAATG 364 365 CTGAACTGGA ATCTAAAATC CAGGAAGAAA GTAACAAAGA GCTCCCTGTT 414 415 CTATGTCCTG ATTACCTGTC TTACTACACT ACCATTGAGG AGCTCCAGCA 464 465 GAAGATCTTG TGTACCAAGG CCGAGAATTC CAGACTGGTC TCGCAAATTG 514 515 ACAACACCAA ACTGACTGCA GATGACTTGA GAGCCAAATA CGAAGCTGAG 564 565 GTGTCTCTAC GCCAGCTGGT AGAGTCAGAT GCCAATGGCC TCAAGCAGAT 614 615 CCTGAATGTG CTGACCCTGG GCAAGGCCGA CCTAGAGGCA CAAGTCCAGT 664 665 CTCTGAAAGA GGAGCTCCTT TGCCTCAAGA ACAACCACAA AGAGGAAATC 714 715 AATTCTTTAC AGTGTCAGCT TGGGGAGAGA CTTGACATTG AAGTGACTGC 764 765 TGCCCCTTCT GCTGACCTAA ACCAGGTTCT ACAAGAAATG AGATGTCAAT 814 815 ATGAGCCCAT CATGGAGACA AACCGCAAAG ATGTGGAACA GTGGTTCAAC 864 865 ACGCAGATAG AGGAGCTGAA TCAACAAGTG GTGACCAGCT CTCAACAGCA 914 915 GCAATGCTGC CAAAAGGAGA TCATAGAACT GAGACGCAGT GTGAACACTC 964 965 TGGAGGTTGA ACTGCAGGCC CAGCATCGAA TGAGAGATTC CCAAGAGTGC 1014 1015 ATCCTAACGG AGACAGAGGC TCGCTACACG GCCTTGCTGA CCCAGATCCA 1064 1065 GAGTCTGATT GATAACCTGG AAGCTCAGCT GGCAGAGATC CGGTGTGCCC 1114 1115 TGGAAAGACA GAACCAAGAA TACGAGATCC TGCTGGACGT CAAGTCCCGG 1164 1165 CTGGAATGTG AGATTACCAC ATACCGCAGC CTTCTGGAGA GCTCGGATGG 1214 1215 CAAGCGTCCC TGTTACCCAC GTGCCACCAA ATGTGAGCCT TCCCCTTGGA 1264 1265 CATCTTGTAA GTCCGGAGCC ATAGAAAGCA CGGCCCCAGC TTGCACATCC 1314 1315 TCATCCCCCT GCAGCTTAAA GGAGCACTGC AGTGCCTGCG GACCCCTGTC 1364 1365 CCGGATACTG GTTAAAATTT GCACCATCAC CAAGGAGATT AAGGATGGGA 1414 1415 AGGTCATTTC TTCTTACGAG CATGTGCAGC CTTGTTTCAT CATCAGACCT 1464 1465 GCCAAAGTCT AACATCCCAA GGTGATGAAA ATGACCCACA TTTATGAAAC *38 *39 AGAGGCCAAT ACATGCTCCT GCCAGAGAGG TTTAAGAAAA CTCCCCAGTC *88 *89 CCTTAAGGTA CTTAGTTTCT TACTACTACA GCGGGTCCCC ATTGCTAGGT *138 *139 AGAATATCTT TTATTCTGCT CCTTCCCTAA CTCACCACTG CTAACA
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PROTEIN SEQUENCE AND DOMAIN INFORMATION
Reference sequence last updated on 2009-07-21 17:00:08
RefSeq ID NP_998821.3
GI 148277620
Isoelectric Point 4.8649
Molecular Weight 55622.9 Daltons
Length 491 amino acids
Download File | Text
Sequence
1 MDTKGCTTTN SPSTPCQNCS RITNVSTISS NNGCHPGGLT VNNCQPAGHV 50 51 LRIPWDQGCQ PTPRFCRKPI YLMNNFNARF SLDDCSWYGE GINSNEKETM 100 101 QILNERLANY LQKVRMLERE NAELESKIQE ESNKELPVLC PDYLSYYTTI 150 151 EELQQKILCT KAENSRLVSQ IDNTKLTADD LRAKYEAEVS LRQLVESDAN 200 201 GLKQILNVLT LGKADLEAQV QSLKEELLCL KNNHKEEINS LQCQLGERLD 250 251 IEVTAAPSAD LNQVLQEMRC QYEPIMETNR KDVEQWFNTQ IEELNQQVVT 300 301 SSQQQQCCQK EIIELRRSVN TLEVELQAQH RMRDSQECIL TETEARYTAL 350 351 LTQIQSLIDN LEAQLAEIRC ALERQNQEYE ILLDVKSRLE CEITTYRSLL 400 401 ESSDGKRPCY PRATKCEPSP WTSCKSGAIE STAPACTSSS PCSLKEHCSA 450 451 CGPLSRILVK ICTITKEIKD GKVISSYEHV QPCFIIRPAK V
Head L1 L12 L2 Tail
1A 1B 2A 2B
Domain Name Probable Starting Amino Acid Position Probable Ending Amino Acid Position
Head 1 96
1A 97 131
L1 132 142
1B 143 243
L12 244 259
2A 260 278
L2 279 286
2B 287 407
Tail 408 491
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RELATED SEQUENCES AND MULTIPLE SEQUENCE ALIGNMENT
The following table shows the orthologous sequences in other organisms as indicated by NCBI HomoloGene ID 19078.
Information last updated on 2007-08-17 12:21:50
Organism NCBI Gene ID mRNA Accession Protein Accession Taxonomy division
Rattus norvegicus 303523 NM_001004130.1 NP_001004130.1 Rodents
Mus musculus 237934 NM_213730.1 NP_998895.1 Rodents
Pan troglodytes 468242 XM_523633.2 XP_523633.1 Primates
Canis familiaris 491004 XM_548124.2 XP_548124.2 Mammals
Vertebrate ClustalW multiple sequence alignments
Multiple sequence alignments were created using ClustalW for vertebrate sequences and the results available for viewing, download and visualization. Please use the analysis tools to include other sequences.
Type of ClustalW alignment Download in FASTA format View file in FASTA format
Nucleotide file view
Protein file view

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